LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012579
hsa-miR-93-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026166
Biotype: transcript isomorph
Gene id: XLOC_012579
Gene Name: XLOC_012579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
59-77
0.008
1
6mer
347-365
0.007
1
9mer
986-1010
0.005
1
9mer
642-666
0.004
0
RP11-486L19.2
hsa-miR-93-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565643
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-551
0.015
1
9mer
247-266
0.008
1
6mer
1452-1467
0.002
0
CTD-2530N21.5
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000314927
Biotype: pseudogene
Gene id: ENSG00000177725
Gene Name: CTD-2530N21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2052-2073
0.016
1
9mer
1350-1370
0.004
0
6mer
958-982
0.002
2
6mer
1640-1664
0.002
0
XLOC_012728
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5037-5061
0.009
0
9mer
4241-4259
0.007
0
6mer
4567-4584
0.004
0
6mer
1370-1392
0.003
2
6mer
3815-3827
0.002
1
XLOC_011567
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023771
Biotype: transcript isomorph
Gene id: XLOC_011567
Gene Name: XLOC_011567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-218
0.012
1
9mer
174-198
0.010
1
6mer
884-899
0.003
1
RP11-557J10.5
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504710
Biotype: lincRNA
Gene id: ENSG00000248686
Gene Name: RP11-557J10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-284
0.013
2
6mer
47-66
0.011
5
RP11-222K16.1
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607601
Biotype: lincRNA
Gene id: ENSG00000271943
Gene Name: RP11-222K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
209-226
0.007
1
6mer
23-35
0.007
1
6mer
344-362
0.006
3
6mer
145-168
0.005
0
TTC28-AS1
hsa-miR-93-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2540-2567
0.012
3
7mer
305-331
0.009
5
6mer
773-798
0.002
1
6mer
1686-1713
0.002
4
XLOC_012977
hsa-miR-93-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026773
Biotype: transcript isomorph
Gene id: XLOC_012977
Gene Name: XLOC_012977
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
492-512
0.009
1
9mer
197-216
0.007
0
6mer
717-736
0.005
0
6mer
136-153
0.003
2
RP11-61I13.3
hsa-miR-93-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430595
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
560-585
0.011
9
7mer
431-444
0.007
4
6mer
195-213
0.004
1
6mer
211-230
0.003
0
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