LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
RP11-7F17.5
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500215
Biotype: lincRNA
Gene id: ENSG00000246548
Gene Name: RP11-7F17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2071-2088
0.025
2
RP11-490G2.2
hsa-miR-93-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561881
Biotype: lincRNA
Gene id: ENSG00000259946
Gene Name: RP11-490G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1715-1729
0.018
3
6mer
1725-1749
0.007
3
RP11-857B24.5
hsa-miR-93-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555157
Biotype: antisense
Gene id: ENSG00000258949
Gene Name: RP11-857B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-208
0.025
1
CTD-2541M15.4
hsa-miR-93-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1272-1297
0.008
2
6mer
1794-1817
0.007
2
6mer
407-421
0.006
1
6mer
2233-2250
0.004
Not Conserved
RP11-231E4.2
hsa-miR-93-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562582
Biotype: lincRNA
Gene id: ENSG00000259779
Gene Name: RP11-231E4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-445
0.025
0
XLOC_009633
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020288
Biotype: transcript isomorph
Gene id: XLOC_009633
Gene Name: XLOC_009633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-105
0.015
1
9mer
609-633
0.009
1
RP11-536K7.3
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448685
Biotype: antisense
Gene id: ENSG00000232807
Gene Name: RP11-536K7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-192
0.025
1
RP4-798P15.3
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
461-465
0.009
8
6mer
5636-5652
0.007
8
6mer
5278-5292
0.002
2
6mer
3450-3475
0.002
2
6mer
2039-2057
0.002
4
6mer
4159-4179
0.001
1
LINC00996
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000477392
Biotype: lincRNA
Gene id: ENSG00000242258
Gene Name: LINC00996
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
858-880
0.011
1
6mer
51-64
0.008
1
6mer
1512-1523
0.006
2
C14orf132
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555004
Biotype: lincRNA
Gene id: ENSG00000227051
Gene Name: C14orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7498-7517
0.008
0
6mer
6984-6997
0.004
3
7mer
4570-4590
0.004
1
6mer
920-946
0.003
1
6mer
6725-6743
0.002
1
8mer
3828-3852
0.002
0
6mer
1731-1755
0.002
1
6mer
1581-1601
0.001
1
RP11-346C20.3
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604855
Biotype: lincRNA
Gene id: ENSG00000271009
Gene Name: RP11-346C20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-219
0.025
0
RP11-282K24.3
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4173-4193
0.012
0
6mer
5369-5389
0.006
0
6mer
4615-4637
0.004
1
6mer
582-598
0.003
1
RGS5
hsa-miR-93-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528019
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-437
0.025
1
XLOC_012613
hsa-miR-93-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-469
0.025
0
RP11-362F19.1
hsa-miR-93-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1008
0.020
1
6mer
2019-2041
0.005
4
MALAT1
hsa-miR-93-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-520
0.012
1
7mer
5506-5522
0.004
2
6mer
2567-2581
0.003
4
6mer
5959-5974
0.002
5
6mer
887-903
0.002
Not Conserved
6mer
7717-7734
0.002
2
CTD-2530N21.5
hsa-miR-93-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000619681
Biotype: sense_overlapping
Gene id: ENSG00000177725
Gene Name: CTD-2530N21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2057-2078
0.016
1
9mer
1355-1375
0.004
0
6mer
963-987
0.002
2
6mer
1645-1669
0.002
0
RP1-63G5.7
hsa-miR-93-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445088
Biotype: sense_intronic
Gene id: ENSG00000237862
Gene Name: RP1-63G5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-809
0.025
1
ASAP1-IT2
hsa-miR-93-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_045385.1
Biotype: sense
Gene id: NR_045385.1 (gene)
Gene Name: ASAP1-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1316-1340
0.011
0
9mer
81-105
0.008
0
6mer
1564-1576
0.005
2
KTN1-AS1
hsa-miR-93-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412224
Biotype: antisense
Gene id: ENSG00000186615
Gene Name: KTN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
81-101
0.009
0
6mer
359-370
0.007
3
6mer
698-720
0.003
0
7mer
1045-1070
0.003
1
6mer
614-632
0.003
0
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