LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
CTD-2192J16.26
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593554
Biotype: lincRNA
Gene id: ENSG00000268945
Gene Name: CTD-2192J16.26
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-283
0.025
1
RP11-12A16.3
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
279-302
0.014
2
7mer
53-67
0.011
0
LINC00664
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3406-3422
0.013
1
6mer
3456-3478
0.013
1
RP11-1148L6.5
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000453810
Biotype: antisense
Gene id: ENSG00000228343
Gene Name: RP11-1148L6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-225
0.025
0
XLOC_003677
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008880
Biotype: transcript isomorph
Gene id: XLOC_003677
Gene Name: XLOC_003677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3277-3291
0.007
3
9mer
1053-1077
0.006
1
6mer
651-668
0.005
3
6mer
3099-3103
0.004
2
7mer
1868-1889
0.003
Not Conserved
RP11-358H9.1
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455363
Biotype: lincRNA
Gene id: ENSG00000226643
Gene Name: RP11-358H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-229
0.025
2
RP11-254F7.2
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567540
Biotype: lincRNA
Gene id: ENSG00000260077
Gene Name: RP11-254F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-56
0.007
1
6mer
1524-1549
0.005
0
6mer
54-77
0.004
1
6mer
546-564
0.003
1
6mer
685-710
0.003
2
6mer
82-104
0.003
Not Conserved
RP11-714L20.1
hsa-miR-93-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1967-1985
0.009
0
9mer
177-201
0.008
0
6mer
2079-2095
0.005
4
6mer
724-734
0.003
1
RP11-61A14.3
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563086
Biotype: lincRNA
Gene id: ENSG00000261088
Gene Name: RP11-61A14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-537
0.009
1
8mer
827-846
0.006
1
6mer
1192-1213
0.005
3
6mer
60-87
0.005
1
RP11-305L7.7
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608358
Biotype: lincRNA
Gene id: ENSG00000273381
Gene Name: RP11-305L7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
549-569
0.008
1
9mer
3841-3860
0.008
1
7mer
2094-2117
0.006
2
6mer
1914-1937
0.002
2
6mer
2055-2072
0.001
7
6mer
2061-2072
0.001
5
AC012593.1
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
262-288
0.014
1
6mer
576-602
0.011
1
GRTP1-AS1
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423246
Biotype: antisense
Gene id: ENSG00000225083
Gene Name: GRTP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-343
0.025
1
XLOC_014368
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029349
Biotype: transcript isomorph
Gene id: XLOC_014368
Gene Name: XLOC_014368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.025
1
XLOC_001216
hsa-miR-93-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000741
Biotype: transcript isomorph
Gene id: XLOC_001216
Gene Name: XLOC_001216
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-227
0.025
2
TEN1-CDK3
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037709.1
Biotype: sense
Gene id: NR_037709.1 (gene)
Gene Name: TEN1-CDK3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-215
0.023
1
6mer
804-829
0.002
1
TMEM256-PLSCR3
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-40
0.009
6
8mer
203-222
0.009
1
6mer
785-806
0.003
6
6mer
403-428
0.003
2
RP3-329A5.8
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605896
Biotype: lincRNA
Gene id: ENSG00000272374
Gene Name: RP3-329A5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.025
2
XLOC_006833
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014749
Biotype: transcript isomorph
Gene id: XLOC_006833
Gene Name: XLOC_006833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2018-2037
0.010
1
9mer
91-111
0.008
1
6mer
2874-2897
0.006
1
6mer
1670-1696
0.002
2
RP11-253D19.1
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440932
Biotype: lincRNA
Gene id: ENSG00000228800
Gene Name: RP11-253D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-503
0.025
Not Conserved
AP006222.2
hsa-miR-93-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448958
Biotype: lincRNA
Gene id: ENSG00000228463
Gene Name: AP006222.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-54
0.025
Not Conserved
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