LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
LAMTOR5-AS1
hsa-miR-93-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590413
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-778
0.023
1
6mer
535-551
0.004
1
RP11-333A23.4
hsa-miR-93-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520259
Biotype: lincRNA
Gene id: ENSG00000253967
Gene Name: RP11-333A23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1186-1205
0.009
1
9mer
78-98
0.008
1
6mer
2042-2065
0.005
1
6mer
838-864
0.003
2
XLOC_011210
hsa-miR-93-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023348
Biotype: transcript isomorph
Gene id: XLOC_011210
Gene Name: XLOC_011210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4215-4237
0.019
1
7mer
2278-2296
0.004
2
6mer
3620-3640
0.002
0
6mer
2934-2961
0.002
0
XLOC_008274
hsa-miR-93-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
800-825
0.008
1
9mer
1791-1811
0.004
0
8mer
3146-3158
0.004
Not Conserved
6mer
209-227
0.004
0
6mer
2161-2182
0.002
1
6mer
2734-2758
0.002
1
6mer
2848-2872
0.002
1
6mer
2624-2644
0.001
Not Conserved
CTD-2515H24.2
hsa-miR-93-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-236
0.026
2
RP11-53B2.1
hsa-miR-93-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-67
0.014
0
7mer
99-123
0.012
0
RP11-536K7.3
hsa-miR-93-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454321
Biotype: antisense
Gene id: ENSG00000232807
Gene Name: RP11-536K7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-178
0.026
1
RP4-717I23.3
hsa-miR-93-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-56
0.026
3
XLOC_006813
hsa-miR-93-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014723
Biotype: transcript isomorph
Gene id: XLOC_006813
Gene Name: XLOC_006813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-39
0.026
Not Conserved
LAMTOR5-AS1
hsa-miR-93-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608486
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
721-741
0.022
1
6mer
498-514
0.004
1
CTD-2310F14.1
hsa-miR-93-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606813
Biotype: antisense
Gene id: ENSG00000271828
Gene Name: CTD-2310F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1432-1452
0.007
1
7mer
207-225
0.006
0
7mer
406-433
0.006
1
6mer
287-303
0.004
1
6mer
646-670
0.003
2
LINC00029
hsa-miR-93-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-85
0.026
1
RP11-153M7.5
hsa-miR-93-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505051
Biotype: antisense
Gene id: ENSG00000249309
Gene Name: RP11-153M7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
456-475
0.026
1
XLOC_009900
hsa-miR-93-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020237
Biotype: transcript isomorph
Gene id: XLOC_009900
Gene Name: XLOC_009900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1383-1402
0.014
1
9mer
1094-1114
0.006
0
7mer
1539-1565
0.005
1
DNM3OS
hsa-miR-93-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6742-6766
0.008
1
7mer
4574-4599
0.005
1
6mer
754-775
0.005
1
6mer
5641-5667
0.002
3
6mer
2672-2697
0.002
3
6mer
4923-4934
0.002
5
6mer
4728-4752
0.002
1
XLOC_000318
hsa-miR-93-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001079
Biotype: transcript isomorph
Gene id: XLOC_000318
Gene Name: XLOC_000318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
161-165
0.006
1
9mer
7012-7031
0.003
1
9mer
6676-6695
0.003
1
6mer
891-910
0.003
4
6mer
4634-4660
0.003
4
7mer
2052-2060
0.003
1
6mer
5547-5570
0.002
1
6mer
1247-1273
0.002
0
6mer
3885-3911
0.001
0
EPB41L4A-AS1
hsa-miR-93-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000427306
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
850-867
0.026
1
RP11-96K19.4
hsa-miR-93-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3667-3689
0.009
1
6mer
5918-5932
0.007
0
6mer
1686-1713
0.006
1
6mer
3468-3482
0.003
0
RP1-225E12.2
hsa-miR-93-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591102
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.019
1
7mer
674-686
0.007
0
GRM5-AS1
hsa-miR-93-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-324
0.018
2
6mer
4498-4517
0.005
3
7mer
1154-1176
0.002
2
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