LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
RP11-400K9.4
hsa-miR-93-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-375
0.023
1
6mer
2349-2373
0.005
0
RP11-513I15.6
hsa-miR-93-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3231-3255
0.012
1
9mer
2247-2268
0.006
1
7mer
6261-6285
0.006
1
6mer
6224-6245
0.003
2
RP11-166B2.3
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-870
0.015
0
9mer
84-104
0.012
1
TPTEP1
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1003-1015
0.027
1
XLOC_002384
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1076-1100
0.015
1
7mer
1364-1391
0.010
0
6mer
813-837
0.002
Not Conserved
RP11-516C1.1
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558047
Biotype: antisense
Gene id: ENSG00000259595
Gene Name: RP11-516C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-457
0.024
4
6mer
254-278
0.003
0
RP11-588H23.3
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548687
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-474
0.011
1
9mer
5484-5508
0.005
0
7mer
643-669
0.005
3
6mer
3134-3158
0.002
2
6mer
4070-4093
0.002
1
6mer
3710-3727
0.001
2
6mer
3328-3354
0.001
1
RP4-717I23.3
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432741
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-251
0.027
3
SNHG16
hsa-miR-93-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-630
0.027
1
RP1-137K2.2
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442936
Biotype: antisense
Gene id: ENSG00000233044
Gene Name: RP1-137K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-41
0.023
1
6mer
34-60
0.005
0
ACVR2B-AS1
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2157-2182
0.014
0
8mer
1668-1686
0.012
0
7mer
1313-1331
0.002
3
NKX2-1-AS1
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521292
Biotype: antisense
Gene id: ENSG00000253563
Gene Name: NKX2-1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1759-1774
0.027
0
LOC285768
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027116.1
Biotype: lincRNA
Gene id: NR_027116.1 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1809-1823
0.019
Not Conserved
7mer
108-135
0.006
Not Conserved
6mer
1067-1077
0.002
Not Conserved
CTD-2313F11.1
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608466
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.027
1
LAMTOR5-AS1
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.023
1
6mer
357-373
0.004
1
XLOC_001430
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003638
Biotype: transcript isomorph
Gene id: XLOC_001430
Gene Name: XLOC_001430
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-519
0.024
0
6mer
229-249
0.004
0
XXbac-BPGBPG55C20.2
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4417-4440
0.010
Not Conserved
7mer
477-499
0.005
0
6mer
5035-5050
0.003
Not Conserved
6mer
1421-1437
0.003
2
6mer
1953-1976
0.002
0
6mer
2819-2845
0.002
2
6mer
2322-2333
0.001
0
6mer
3910-3934
0.001
Not Conserved
RP11-626K17.3
hsa-miR-93-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3851-3872
0.008
1
7mer
3533-3557
0.008
0
9mer
2209-2228
0.005
0
7mer
1816-1840
0.003
0
6mer
999-1022
0.003
1
LOC285768
hsa-miR-93-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027115.2
Biotype: lincRNA
Gene id: NR_027115.2 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1916-1930
0.019
Not Conserved
7mer
108-135
0.007
Not Conserved
6mer
1174-1184
0.002
Not Conserved
RP11-96C23.5
hsa-miR-93-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
678-704
0.025
1
6mer
1046-1062
0.002
0
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