LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010670
hsa-miR-93-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1862-1878
0.031
1
XLOC_009515
hsa-miR-93-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019718
Biotype: transcript isomorph
Gene id: XLOC_009515
Gene Name: XLOC_009515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-68
0.022
2
7mer
415-440
0.009
0
XLOC_003079
hsa-miR-93-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006467
Biotype: transcript isomorph
Gene id: XLOC_003079
Gene Name: XLOC_003079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-281
0.031
1
STARD13-AS
hsa-miR-93-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608315
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.031
4
LINC01197
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-934
0.028
3
6mer
661-684
0.003
1
XLOC_013293
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027290
Biotype: transcript isomorph
Gene id: XLOC_013293
Gene Name: XLOC_013293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-26
0.031
3
STARD13-AS
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-81
0.031
4
XLOC_012676
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026329
Biotype: transcript isomorph
Gene id: XLOC_012676
Gene Name: XLOC_012676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-239
0.021
1
7mer
308-334
0.010
1
RP11-704C2.1
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564156
Biotype: lincRNA
Gene id: ENSG00000261194
Gene Name: RP11-704C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-689
0.031
1
RP3-402G11.25
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607943
Biotype: antisense
Gene id: ENSG00000273188
Gene Name: RP3-402G11.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
300-324
0.018
1
7mer
128-148
0.012
0
CTB-111F10.1
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415249
Biotype: lincRNA
Gene id: ENSG00000223665
Gene Name: CTB-111F10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-370
0.017
1
7mer
117-137
0.014
1
STARD13-AS
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.031
4
CTA-243E7.1
hsa-miR-93-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
855-879
0.009
1
9mer
12200-12224
0.006
1
6mer
309-327
0.005
1
9mer
5780-5800
0.004
1
9mer
8321-8345
0.002
0
8mer
4007-4027
0.002
0
6mer
11071-11096
0.001
0
6mer
7773-7796
0.001
1
LINC01375
hsa-miR-93-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428485
Biotype: lincRNA
Gene id: ENSG00000226159
Gene Name: LINC01375
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
811-828
0.016
3
7mer
659-684
0.006
1
6mer
1535-1559
0.006
3
6mer
1443-1459
0.003
1
AC096669.1
hsa-miR-93-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-577
0.031
0
XLOC_009034
hsa-miR-93-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-177
0.022
0
6mer
181-203
0.009
2
XLOC_010574
hsa-miR-93-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-620
0.031
1
FLJ37505
hsa-miR-93-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1085-1106
0.019
Not Conserved
7mer
588-603
0.007
0
6mer
315-340
0.004
1
RP11-588H23.3
hsa-miR-93-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548924
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-556
0.030
1
XLOC_009855
hsa-miR-93-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
917-936
0.025
1
6mer
276-302
0.006
0
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