LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
CTD-2130F23.1
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506429
Biotype: lincRNA
Gene id: ENSG00000248533
Gene Name: CTD-2130F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-43
0.032
0
XLOC_002585
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5724-5745
0.012
3
6mer
6000-6016
0.007
4
9mer
718-738
0.006
1
6mer
4288-4308
0.003
1
6mer
2069-2091
0.002
2
6mer
4839-4858
0.002
1
RP11-774O3.3
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
195-212
0.008
2
6mer
3042-3062
0.007
1
6mer
502-526
0.005
0
6mer
2156-2177
0.002
Not Conserved
6mer
1550-1560
0.001
1
6mer
2065-2089
0.001
0
6mer
1805-1825
0.001
0
6mer
2014-2038
0.001
0
6mer
1499-1509
0.001
1
6mer
1963-1984
0.001
0
6mer
1652-1673
0.001
1
6mer
1754-1774
0.001
1
6mer
1703-1727
0.001
0
AL136419.6
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528804
Biotype: retained_intron
Gene id: ENSG00000260669
Gene Name: AL136419.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1759-1786
0.016
7
9mer
89-113
0.007
0
6mer
309-328
0.004
1
7mer
222-246
0.004
1
6mer
1052-1069
0.001
1
STARD13-AS
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609167
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-50
0.032
4
LINC00948
hsa-miR-93-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414264
Biotype: lincRNA
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-308
0.017
4
6mer
358-370
0.015
8
RP11-799D4.4
hsa-miR-93-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590478
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
558-578
0.023
1
9mer
1078-1102
0.009
1
LOC401324
hsa-miR-93-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
313-340
0.024
0
7mer
2134-2153
0.004
8
6mer
2697-2721
0.003
1
AC105339.1
hsa-miR-93-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440479
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-243
0.022
6
9mer
1797-1817
0.005
1
6mer
710-726
0.003
1
6mer
1263-1278
0.002
1
LAMTOR5-AS1
hsa-miR-93-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609709
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-723
0.028
1
6mer
480-496
0.004
1
AP000479.1
hsa-miR-93-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526436
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1227
0.028
1
6mer
1518-1536
0.002
0
6mer
1589-1607
0.002
1
XLOC_001066
hsa-miR-93-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001706
Biotype: transcript isomorph
Gene id: XLOC_001066
Gene Name: XLOC_001066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-448
0.023
0
7mer
391-407
0.008
0
AP006285.6
hsa-miR-93-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000436539
Biotype: lincRNA
Gene id: ENSG00000227306
Gene Name: AP006285.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-292
0.020
1
7mer
374-396
0.012
1
TSG1
hsa-miR-93-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_015362.1
Biotype: lincRNA
Gene id: NR_015362.1 (gene)
Gene Name: TSG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4098-4123
0.018
0
6mer
103-128
0.006
1
6mer
275-299
0.004
0
6mer
3378-3395
0.001
0
6mer
1244-1267
0.001
1
6mer
1580-1606
0.001
0
RP11-323I15.5
hsa-miR-93-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559246
Biotype: lincRNA
Gene id: ENSG00000259336
Gene Name: RP11-323I15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
632-645
0.023
0
7mer
1037-1060
0.008
1
STARD13-AS
hsa-miR-93-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609137
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.031
4
RP11-128N14.5
hsa-miR-93-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613261
Biotype: sense_intronic
Gene id: ENSG00000276573
Gene Name: RP11-128N14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-142
0.031
2
XLOC_011715
hsa-miR-93-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3508-3531
0.016
1
8mer
3352-3372
0.014
1
6mer
2341-2365
0.002
2
STARD13-AS
hsa-miR-93-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607944
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.031
4
STARD13-AS
hsa-miR-93-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.031
4
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