LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-93-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LOC101929154
hsa-miR-93-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105013.1
Biotype: lincRNA
Gene id: NR_105013.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-187
0.042
0
LINC00691
hsa-miR-93-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436123
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-180
0.042
1
RP11-669C19.1
hsa-miR-93-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566804
Biotype: lincRNA
Gene id: ENSG00000261734
Gene Name: RP11-669C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-641
0.018
4
7mer
1253-1278
0.009
1
7mer
1524-1542
0.008
2
6mer
327-340
0.007
1
XLOC_012665
hsa-miR-93-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026191
Biotype: transcript isomorph
Gene id: XLOC_012665
Gene Name: XLOC_012665
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-401
0.032
6
6mer
345-368
0.010
8
LINC01135
hsa-miR-93-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_108106.1
Biotype: lincRNA
Gene id: NR_108106.1 (gene)
Gene Name: LINC01135
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-603
0.040
4
6mer
479-504
0.002
0
RP1-309I22.2
hsa-miR-93-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26963-26987
0.010
0
6mer
26268-26284
0.005
11
7mer
4385-4402
0.004
0
6mer
24411-24437
0.003
6
7mer
15588-15598
0.003
2
7mer
2710-2733
0.002
0
6mer
16839-16856
0.002
3
6mer
19205-19228
0.002
1
7mer
14430-14453
0.002
2
7mer
10708-10732
0.002
1
6mer
9284-9311
0.002
3
6mer
21087-21104
0.001
1
6mer
27591-27608
0.001
1
6mer
26517-26533
0.001
1
6mer
20820-20842
0.001
0
LOC101929154
hsa-miR-93-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105012.1
Biotype: lincRNA
Gene id: NR_105012.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-294
0.042
0
LINC01477
hsa-miR-93-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566101
Biotype: lincRNA
Gene id: ENSG00000261715
Gene Name: LINC01477
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-401
0.032
6
6mer
345-368
0.010
8
LINC00500
hsa-miR-93-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515860
Biotype: lincRNA
Gene id: ENSG00000249381
Gene Name: LINC00500
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-173
0.042
0
XLOC_011943
hsa-miR-93-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024234
Biotype: transcript isomorph
Gene id: XLOC_011943
Gene Name: XLOC_011943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
880-898
0.042
1
RP11-611E13.2
hsa-miR-93-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549651
Biotype: antisense
Gene id: ENSG00000257815
Gene Name: RP11-611E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-384
0.035
1
6mer
144-163
0.007
2
RP11-355O1.11
hsa-miR-93-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566531
Biotype: sense_overlapping
Gene id: ENSG00000261094
Gene Name: RP11-355O1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.042
1
DNMBP-AS1
hsa-miR-93-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434409
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2010-2023
0.029
1
9mer
1221-1246
0.005
1
9mer
1524-1544
0.005
0
6mer
173-194
0.003
2
HNF1A-AS1
hsa-miR-93-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535301
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
311-335
0.042
5
KLHL7-AS1
hsa-miR-93-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419813
Biotype: lincRNA
Gene id: ENSG00000230658
Gene Name: KLHL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.034
1
6mer
1816-1834
0.004
0
6mer
869-890
0.004
1
AC144835.1
hsa-miR-93-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554798
Biotype: lincRNA
Gene id: ENSG00000258483
Gene Name: AC144835.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-307
0.038
3
6mer
323-349
0.003
1
RP11-266K4.13
hsa-miR-93-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
351-369
0.017
1
7mer
34-60
0.015
0
6mer
1005-1030
0.009
0
RP11-171I2.2
hsa-miR-93-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1529-1541
0.024
6
7mer
711-725
0.008
3
6mer
233-251
0.007
6
6mer
1012-1032
0.004
6
AC105339.1
hsa-miR-93-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559535
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-196
0.023
4
7mer
356-376
0.018
6
RNF144A-AS1
hsa-miR-93-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1427-1445
0.022
4
9mer
243-263
0.008
1
6mer
2714-2723
0.005
2
9mer
1874-1898
0.004
0
6mer
809-831
0.003
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept