LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
LINC00536
hsa-miR-93-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505156
Biotype: lincRNA
Gene id: ENSG00000249917
Gene Name: LINC00536
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2564-2584
0.045
8
RP11-96C23.14
hsa-miR-93-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444180
Biotype: processed_transcript
Gene id: ENSG00000272508
Gene Name: RP11-96C23.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21-47
0.039
1
6mer
389-405
0.003
0
6mer
645-671
0.002
1
RP11-242F24.1
hsa-miR-93-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432429
Biotype: lincRNA
Gene id: ENSG00000228750
Gene Name: RP11-242F24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1153-1176
0.025
0
9mer
1368-1392
0.012
0
6mer
39-62
0.009
6
XLOC_012551
hsa-miR-93-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025730
Biotype: transcript isomorph
Gene id: XLOC_012551
Gene Name: XLOC_012551
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-253
0.040
3
6mer
39-60
0.005
0
CTC-369A16.2
hsa-miR-93-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-460
0.026
5
7mer
95-113
0.019
3
XLOC_000695
hsa-miR-93-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-323
0.021
1
9mer
2876-2894
0.007
1
6mer
2993-3010
0.006
3
8mer
2004-2024
0.004
0
6mer
2928-2952
0.004
Not Conserved
6mer
864-881
0.003
2
RP11-77A13.1
hsa-miR-93-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000556770
Biotype: antisense
Gene id: ENSG00000259094
Gene Name: RP11-77A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-16
0.028
Not Conserved
8mer
200-218
0.015
Not Conserved
6mer
654-669
0.002
Not Conserved
RP11-47I22.1
hsa-miR-93-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556543
Biotype: antisense
Gene id: ENSG00000258926
Gene Name: RP11-47I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-307
0.040
2
6mer
313-336
0.004
1
XLOC_011623
hsa-miR-93-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024244
Biotype: transcript isomorph
Gene id: XLOC_011623
Gene Name: XLOC_011623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1784-1801
0.045
2
LINC01517
hsa-miR-93-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
276-293
0.028
0
6mer
95-120
0.016
0
RP11-278I4.2
hsa-miR-93-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-953
0.037
7
6mer
752-773
0.004
5
6mer
859-879
0.003
1
RP11-315E17.1
hsa-miR-93-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550272
Biotype: antisense
Gene id: ENSG00000258162
Gene Name: RP11-315E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
674-698
0.044
0
RFX3-AS1
hsa-miR-93-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427722
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-921
0.040
0
6mer
503-529
0.004
3
AC144831.1
hsa-miR-93-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2373
0.028
1
9mer
373-395
0.010
0
6mer
2071-2096
0.005
1
XLOC_005501
hsa-miR-93-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1768-1792
0.044
1
RP4-717I23.3
hsa-miR-93-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446528
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-338
0.024
3
7mer
83-103
0.019
8
AC005083.1
hsa-miR-93-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439446
Biotype: retained_intron
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
635-655
0.044
0
LINC01492
hsa-miR-93-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425157
Biotype: lincRNA
Gene id: ENSG00000225564
Gene Name: LINC01492
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-402
0.035
5
6mer
118-143
0.007
1
6mer
301-325
0.002
0
FLJ42627
hsa-miR-93-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7076-7093
0.038
2
9mer
4566-4585
0.002
0
7mer
1717-1741
0.002
1
6mer
2092-2111
0.001
0
AC005019.3
hsa-miR-93-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434321
Biotype: lincRNA
Gene id: ENSG00000224330
Gene Name: AC005019.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-49
0.043
3
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