LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
JPX
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602938
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-55
0.018
0
8mer+wobble
417-433
0.004
0
6mer
243-258
0.003
1
RP11-624L4.1
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560197
Biotype: lincRNA
Gene id: ENSG00000259345
Gene Name: RP11-624L4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
984-997
0.020
0
6mer
300-313
0.005
1
AL133493.2
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-60
0.019
1
8mer
1436-1451
0.004
1
8mer+wobble
1139-1154
0.002
0
6mer
3547-3568
0.001
Not Conserved
ISPD-AS1
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438573
Biotype: antisense
Gene id: ENSG00000229688
Gene Name: ISPD-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-82
0.021
1
6mer
1020-1036
0.002
2
6mer
1084-1106
0.002
3
LINC00861
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517869
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
553-571
0.025
3
RP11-525K10.1
hsa-miR-92a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567851
Biotype: lincRNA
Gene id: ENSG00000260706
Gene Name: RP11-525K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-216
0.020
1
6mer
411-429
0.005
0
XLOC_013293
hsa-miR-92a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027290
Biotype: transcript isomorph
Gene id: XLOC_013293
Gene Name: XLOC_013293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-310
0.025
1
XLOC_010938
hsa-miR-92a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022637
Biotype: transcript isomorph
Gene id: XLOC_010938
Gene Name: XLOC_010938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-213
0.025
0
RP11-153K16.2
hsa-miR-92a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538297
Biotype: lincRNA
Gene id: ENSG00000115934
Gene Name: RP11-153K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1278-1293
0.025
1
RP11-710C12.1
hsa-miR-92a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605849
Biotype: antisense
Gene id: ENSG00000271474
Gene Name: RP11-710C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3064-3075
0.015
0
6mer
2689-2708
0.003
2
6mer
2521-2537
0.003
1
6mer
1929-1956
0.002
2
6mer
2004-2026
0.001
2
AC078882.1
hsa-miR-92a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436132
Biotype: sense_overlapping
Gene id: ENSG00000244125
Gene Name: AC078882.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-341
0.025
2
ESRG
hsa-miR-92a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027122.1
Biotype: antisense
Gene id: NR_027122.1 (gene)
Gene Name: ESRG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
27-50
0.015
7
6mer
57-80
0.008
3
6mer
2122-2144
0.002
Not Conserved
RP11-366L20.2
hsa-miR-92a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504038
Biotype: antisense
Gene id: ENSG00000197301
Gene Name: RP11-366L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
200-219
0.025
0
C10orf32-ASMT
hsa-miR-92a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_037644.1
Biotype: sense
Gene id: NR_037644.1 (gene)
Gene Name: C10orf32-ASMT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2704-2709
0.017
1
6mer
280-301
0.008
7
ESRG
hsa-miR-92a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000583516
Biotype: sense_intronic
Gene id: ENSG00000265992
Gene Name: ESRG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
29-52
0.015
7
6mer
59-82
0.008
3
6mer
2124-2146
0.002
Not Conserved
RP11-216M21.7
hsa-miR-92a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-47
0.018
0
6mer
1232-1259
0.006
0
RP11-49I11.1
hsa-miR-92a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568654
Biotype: antisense
Gene id: ENSG00000260552
Gene Name: RP11-49I11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-369
0.025
2
AC072062.1
hsa-miR-92a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607412
Biotype: antisense
Gene id: ENSG00000229267
Gene Name: AC072062.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1349-1372
0.025
0
RP11-74J13.8
hsa-miR-92a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619407
Biotype: antisense
Gene id: ENSG00000278390
Gene Name: RP11-74J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-372
0.011
1
7mer
357-379
0.011
1
8mer+wobble
1380-1395
0.003
1
CTB-96E2.7
hsa-miR-92a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577850
Biotype: antisense
Gene id: ENSG00000265618
Gene Name: CTB-96E2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1029-1044
0.025
1
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