LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
CTC-347C20.1
hsa-miR-92a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513767
Biotype: lincRNA
Gene id: ENSG00000251613
Gene Name: CTC-347C20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-765
0.026
1
LINC00320
hsa-miR-92a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_109788.1
Biotype: lincRNA
Gene id: NR_109788.1 (gene)
Gene Name: LINC00320
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-736
0.021
6
6mer
604-630
0.004
1
RP11-309L24.4
hsa-miR-92a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3254-3275
0.026
1
RP11-74D7.3
hsa-miR-92a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621925
Biotype: sense_intronic
Gene id: ENSG00000278472
Gene Name: RP11-74D7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-41
0.026
1
RP5-967N21.11
hsa-miR-92a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619201
Biotype: lincRNA
Gene id: ENSG00000275632
Gene Name: RP5-967N21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-254
0.026
0
XLOC_005368
hsa-miR-92a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011877
Biotype: transcript isomorph
Gene id: XLOC_005368
Gene Name: XLOC_005368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
814-823
0.026
4
RP11-456O19.2
hsa-miR-92a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589983
Biotype: lincRNA
Gene id: ENSG00000267057
Gene Name: RP11-456O19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-253
0.026
1
CTC-428H11.2
hsa-miR-92a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607486
Biotype: antisense
Gene id: ENSG00000272367
Gene Name: CTC-428H11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
887-914
0.026
2
CTD-2571L23.8
hsa-miR-92a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599924
Biotype: lincRNA
Gene id: ENSG00000268746
Gene Name: CTD-2571L23.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-199
0.026
0
XLOC_002368
hsa-miR-92a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2596-2621
0.013
1
6mer
298-317
0.004
2
6mer
695-716
0.003
2
6mer
2059-2063
0.002
2
6mer
3563-3581
0.002
0
6mer
2591-2617
0.001
2
RP11-157E16.1
hsa-miR-92a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604028
Biotype: antisense
Gene id: ENSG00000270207
Gene Name: RP11-157E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-89
0.025
2
RPARP-AS1
hsa-miR-92a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598368
Biotype: retained_intron
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-88
0.009
1
6mer
18-35
0.008
1
6mer
319-336
0.005
1
6mer
2219-2235
0.003
0
JPX
hsa-miR-92a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602546
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-33
0.019
0
8mer+wobble
344-360
0.003
0
6mer
170-185
0.003
1
CTD-2008L17.2
hsa-miR-92a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000382897
Biotype: lincRNA
Gene id: ENSG00000206129
Gene Name: CTD-2008L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
680-698
0.014
0
6mer
2461-2488
0.004
0
6mer
2392-2416
0.004
2
7mer
1276-1302
0.004
0
RP11-1260E13.3
hsa-miR-92a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571512
Biotype: antisense
Gene id: ENSG00000262558
Gene Name: RP11-1260E13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-617
0.023
Not Conserved
6mer
342-365
0.003
0
GTF3C2-AS1
hsa-miR-92a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589853
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
105-127
0.025
0
CTD-2245F17.2
hsa-miR-92a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600257
Biotype: antisense
Gene id: ENSG00000268842
Gene Name: CTD-2245F17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
168-193
0.025
0
C10orf40
hsa-miR-92a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000521074
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4102-4127
0.018
1
6mer
796-808
0.004
1
6mer
1499-1517
0.002
1
6mer
1730-1752
0.002
1
TSIX
hsa-miR-92a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36135-36155
0.004
1
7mer
12865-12888
0.004
Not Conserved
7mer
10587-10614
0.003
Not Conserved
6mer
6357-6379
0.003
1
8mer+wobble
544-559
0.002
0
6mer
32625-32650
0.002
1
6mer
15050-15066
0.002
Not Conserved
6mer
9286-9305
0.002
1
6mer
15232-15253
0.001
Not Conserved
6mer
16847-16866
0.001
0
6mer
1956-1982
0.001
Not Conserved
NUTM2B-AS1
hsa-miR-92a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600376
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-76
0.020
1
6mer
233-244
0.005
0
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