LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2008A1.3
hsa-miR-92a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611946
Biotype: lincRNA
Gene id: ENSG00000276121
Gene Name: CTD-2008A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-32
0.027
2
RP11-85B7.2
hsa-miR-92a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-874
0.007
0
7mer
383-404
0.007
0
8mer
4354-4369
0.005
0
8mer+wobble
2264-2290
0.004
1
7mer
844-863
0.003
Not Conserved
RP11-315O6.2
hsa-miR-92a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529278
Biotype: antisense
Gene id: ENSG00000255482
Gene Name: RP11-315O6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-468
0.027
1
LINC00320
hsa-miR-92a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000437238
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
711-731
0.022
6
6mer
599-625
0.005
1
RP11-108M9.3
hsa-miR-92a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438002
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2483-2498
0.027
0
RP11-398A8.4
hsa-miR-92a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610188
Biotype: lincRNA
Gene id: ENSG00000273461
Gene Name: RP11-398A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-444
0.027
2
RP11-391M1.4
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-263
0.025
0
8mer+wobble
1394-1409
0.002
Not Conserved
RP11-544A12.8
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000502188
Biotype: antisense
Gene id: ENSG00000246851
Gene Name: RP11-544A12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-199
0.014
1
8mer
1665-1689
0.010
1
8mer+wobble
1519-1534
0.001
1
6mer
1496-1522
0.001
1
XLOC_010198
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020920
Biotype: transcript isomorph
Gene id: XLOC_010198
Gene Name: XLOC_010198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-466
0.022
0
6mer
50-73
0.004
0
XLOC_006485
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013855
Biotype: transcript isomorph
Gene id: XLOC_006485
Gene Name: XLOC_006485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3626-3645
0.014
0
7mer
3990-3999
0.009
0
6mer
1278-1291
0.002
0
6mer
1265-1291
0.001
1
AC011747.4
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4995-5013
0.010
1
7mer
7928-7948
0.006
1
7mer
3301-3319
0.003
0
6mer
6809-6824
0.002
1
6mer
2164-2180
0.002
0
6mer
6215-6240
0.001
1
6mer
743-757
0.001
Not Conserved
6mer
3456-3475
0.001
0
RP13-650J16.1
hsa-miR-92a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584705
Biotype: antisense
Gene id: ENSG00000264569
Gene Name: RP13-650J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
603-620
0.026
1
XLOC_001200
hsa-miR-92a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
9205-9227
0.016
0
7mer
360-365
0.009
Not Conserved
6mer
3001-3019
0.001
0
FLJ10038
hsa-miR-92a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026891.1
Biotype: sense
Gene id: NR_026891.1 (gene)
Gene Name: FLJ10038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
285-301
0.020
0
7mer
2798-2813
0.003
2
7mer
3474-3491
0.003
0
AC099342.1
hsa-miR-92a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455373
Biotype: lincRNA
Gene id: ENSG00000226097
Gene Name: AC099342.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-154
0.026
2
XLOC_008559
hsa-miR-92a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018783
Biotype: transcript isomorph
Gene id: XLOC_008559
Gene Name: XLOC_008559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1321-1337
0.016
0
6mer
550-564
0.004
2
6mer
2974-2994
0.004
2
6mer
379-404
0.003
1
RP4-651E10.4
hsa-miR-92a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456587
Biotype: antisense
Gene id: ENSG00000236915
Gene Name: RP4-651E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-305
0.018
5
6mer
20-39
0.008
3
RP4-697P8.3
hsa-miR-92a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448859
Biotype: lincRNA
Gene id: ENSG00000232900
Gene Name: RP4-697P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-63
0.018
Not Conserved
6mer
1497-1521
0.004
1
6mer
1191-1201
0.004
2
CTD-2199O4.7
hsa-miR-92a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606203
Biotype: lincRNA
Gene id: ENSG00000271998
Gene Name: CTD-2199O4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-241
0.013
1
6mer
2352-2372
0.009
3
6mer
305-316
0.004
1
AL928768.3
hsa-miR-92a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000497872
Biotype: lincRNA
Gene id: ENSG00000253701
Gene Name: AL928768.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-39
0.026
0
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