LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP3-507I15.2
hsa-miR-92a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000566241
Biotype: lincRNA
Gene id: ENSG00000261212
Gene Name: RP3-507I15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-315
0.027
2
XLOC_010050
hsa-miR-92a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020208
Biotype: transcript isomorph
Gene id: XLOC_010050
Gene Name: XLOC_010050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-255
0.022
3
6mer
324-338
0.006
3
RP1-93H18.7
hsa-miR-92a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606179
Biotype: lincRNA
Gene id: ENSG00000272403
Gene Name: RP1-93H18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-91
0.027
3
XLOC_009447
hsa-miR-92a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019644
Biotype: transcript isomorph
Gene id: XLOC_009447
Gene Name: XLOC_009447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3056-3072
0.015
1
7mer
2967-2991
0.009
1
8mer
1994-2009
0.003
0
BCDIN3D-AS1
hsa-miR-92a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551146
Biotype: antisense
Gene id: ENSG00000258057
Gene Name: BCDIN3D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-626
0.027
1
XLOC_000972
hsa-miR-92a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001635
Biotype: transcript isomorph
Gene id: XLOC_000972
Gene Name: XLOC_000972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1416-1439
0.022
1
7mer
1337-1359
0.005
1
MUC19
hsa-miR-92a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19598-19623
0.009
Not Conserved
8mer
19326-19351
0.008
Not Conserved
6mer
3803-3814
0.003
5
6mer
2840-2851
0.003
7
6mer
1465-1479
0.002
2
8mer+mismatch
14491-14518
0.001
Not Conserved
6mer
3389-3405
0.001
Not Conserved
PROSER2-AS1
hsa-miR-92a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445498
Biotype: antisense
Gene id: ENSG00000225778
Gene Name: PROSER2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1182-1198
0.013
0
7mer
274-295
0.010
0
6mer
1760-1777
0.002
1
8mer+wobble
1569-1584
0.002
1
RP11-611E13.2
hsa-miR-92a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553135
Biotype: antisense
Gene id: ENSG00000257815
Gene Name: RP11-611E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-8
0.027
3
XLOC_014318
hsa-miR-92a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029658
Biotype: transcript isomorph
Gene id: XLOC_014318
Gene Name: XLOC_014318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-142
0.027
0
LINC01446
hsa-miR-92a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000380970
Biotype: lincRNA
Gene id: ENSG00000205628
Gene Name: LINC01446
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2644-2666
0.027
0
RP11-218M11.3
hsa-miR-92a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579378
Biotype: lincRNA
Gene id: ENSG00000263860
Gene Name: RP11-218M11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-83
0.027
0
XLOC_009303
hsa-miR-92a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019502
Biotype: transcript isomorph
Gene id: XLOC_009303
Gene Name: XLOC_009303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
291-309
0.020
11
6mer
543-568
0.007
7
LINC00320
hsa-miR-92a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416768
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-736
0.022
6
6mer
604-630
0.004
1
JPX
hsa-miR-92a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602737
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-52
0.018
0
8mer
335-349
0.009
0
MAGI2-AS3
hsa-miR-92a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1519-1541
0.006
2
8mer
7363-7378
0.005
0
6mer
8409-8429
0.004
2
6mer
8388-8406
0.003
1
6mer
6028-6050
0.002
2
6mer
3317-3326
0.002
0
6mer
1666-1670
0.002
1
6mer
3611-3635
0.001
1
6mer
3629-3650
0.001
0
DLEU2
hsa-miR-92a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621282
Biotype: antisense
Gene id: ENSG00000231607
Gene Name: DLEU2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2666-2688
0.014
4
7mer
2577-2588
0.010
2
8mer+wobble
614-629
0.003
0
RP11-403N16.3
hsa-miR-92a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1264-1285
0.010
1
6mer
2208-2223
0.009
11
6mer
816-838
0.004
1
6mer
1119-1141
0.002
1
6mer
841-859
0.002
3
RP11-153K16.1
hsa-miR-92a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545400
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1435-1447
0.023
6
6mer
614-636
0.004
3
LINC01359
hsa-miR-92a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2634-2656
0.009
0
8mer+wobble
2641-2656
0.005
0
8mer+wobble
525-540
0.005
1
8mer+wobble
856-871
0.004
1
6mer
2203-2216
0.003
1
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