LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
CTC-523E23.5
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601776
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4523-4545
0.016
0
9mer
4523-4538
0.009
0
6mer
4952-4968
0.004
0
8mer+wobble
2225-2240
0.001
0
XLOC_005773
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011224
Biotype: transcript isomorph
Gene id: XLOC_005773
Gene Name: XLOC_005773
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-65
0.031
3
LINC00323
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_024100.1
Biotype: lincRNA
Gene id: NR_024100.1 (gene)
Gene Name: LINC00323
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-174
0.022
1
6mer
16-35
0.009
3
CTA-992D9.10
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623814
Biotype: lincRNA
Gene id: ENSG00000279914
Gene Name: CTA-992D9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-766
0.031
1
XLOC_001726
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1260-1278
0.031
3
LINC01347
hsa-miR-92a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438255
Biotype: lincRNA
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-90
0.031
0
XLOC_011881
hsa-miR-92a-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024263
Biotype: transcript isomorph
Gene id: XLOC_011881
Gene Name: XLOC_011881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-738
0.031
1
XLOC_011559
hsa-miR-92a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023765
Biotype: transcript isomorph
Gene id: XLOC_011559
Gene Name: XLOC_011559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-41
0.017
1
8mer
419-431
0.013
Not Conserved
JPX
hsa-miR-92a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414209
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-37
0.019
0
8mer
202-216
0.009
0
8mer+wobble
653-669
0.003
0
RP11-15H20.6
hsa-miR-92a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1563-1582
0.031
1
RP11-352B15.2
hsa-miR-92a-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
480-500
0.015
0
6mer
1079-1103
0.015
0
CTC-487M23.7
hsa-miR-92a-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607284
Biotype: antisense
Gene id: ENSG00000272389
Gene Name: CTC-487M23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-327
0.025
1
6mer
175-192
0.006
2
CTA-228A9.4
hsa-miR-92a-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6546-6552
0.009
1
6mer
20328-20353
0.005
0
8mer+wobble
15863-15878
0.004
1
7mer
14869-14891
0.004
0
8mer+wobble
145-160
0.003
1
8mer+wobble
18694-18709
0.001
1
8mer+wobble
17368-17383
0.001
1
6mer
10262-10274
0.001
0
6mer
17417-17441
0.001
0
RP11-696D21.2
hsa-miR-92a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557475
Biotype: lincRNA
Gene id: ENSG00000258943
Gene Name: RP11-696D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-839
0.030
2
LINC01128
hsa-miR-92a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4257-4272
0.018
0
6mer
6341-6345
0.008
1
7mer
1282-1303
0.004
1
LINC01142
hsa-miR-92a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440404
Biotype: lincRNA
Gene id: ENSG00000224286
Gene Name: LINC01142
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1014-1037
0.018
0
6mer
255-277
0.009
6
6mer
942-959
0.003
3
CH17-437K3.1
hsa-miR-92a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417218
Biotype: lincRNA
Gene id: ENSG00000227082
Gene Name: CH17-437K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3618-3638
0.025
1
6mer
2502-2513
0.003
1
6mer
1797-1811
0.002
1
RP11-11N9.4
hsa-miR-92a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500843
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-166
0.024
1
6mer
441-467
0.006
1
RP3-523K23.2
hsa-miR-92a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562834
Biotype: sense_overlapping
Gene id: ENSG00000261116
Gene Name: RP3-523K23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-639
0.030
1
LINC01128
hsa-miR-92a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4373-4388
0.018
0
6mer
6457-6461
0.008
1
7mer
1398-1419
0.004
1
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