LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004685
hsa-miR-92a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010217
Biotype: transcript isomorph
Gene id: XLOC_004685
Gene Name: XLOC_004685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-209
0.032
0
XLOC_003884
hsa-miR-92a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008438
Biotype: transcript isomorph
Gene id: XLOC_003884
Gene Name: XLOC_003884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-398
0.032
Not Conserved
LINC00693
hsa-miR-92a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432518
Biotype: antisense
Gene id: ENSG00000228214
Gene Name: LINC00693
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2103-2116
0.016
2
6mer
2127-2142
0.007
2
6mer
2081-2098
0.005
0
6mer
1526-1549
0.003
2
XLOC_003053
hsa-miR-92a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005744
Biotype: transcript isomorph
Gene id: XLOC_003053
Gene Name: XLOC_003053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-273
0.021
1
6mer
1869-1884
0.006
2
6mer
364-374
0.004
1
RP5-991C6.4
hsa-miR-92a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457116
Biotype: sense_intronic
Gene id: ENSG00000232031
Gene Name: RP5-991C6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-44
0.031
3
CTC-251D13.1
hsa-miR-92a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606930
Biotype: antisense
Gene id: ENSG00000271795
Gene Name: CTC-251D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-314
0.031
0
XLOC_013275
hsa-miR-92a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027244
Biotype: transcript isomorph
Gene id: XLOC_013275
Gene Name: XLOC_013275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
390-402
0.011
0
6mer
315-334
0.011
0
6mer
460-479
0.010
0
RP11-509E10.1
hsa-miR-92a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000549303
Biotype: sense_intronic
Gene id: ENSG00000257180
Gene Name: RP11-509E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-123
0.031
1
CTC-250I14.3
hsa-miR-92a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591825
Biotype: antisense
Gene id: ENSG00000267512
Gene Name: CTC-250I14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-374
0.031
6
RP11-13A1.1
hsa-miR-92a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500381
Biotype: lincRNA
Gene id: ENSG00000246363
Gene Name: RP11-13A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-70
0.019
2
7mer
2657-2678
0.009
Not Conserved
6mer
684-698
0.002
0
6mer
636-655
0.001
1
RP11-151E14.1
hsa-miR-92a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569070
Biotype: lincRNA
Gene id: ENSG00000261035
Gene Name: RP11-151E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-353
0.019
1
7mer
188-197
0.012
1
XLOC_009248
hsa-miR-92a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019969
Biotype: transcript isomorph
Gene id: XLOC_009248
Gene Name: XLOC_009248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1550-1555
0.022
1
7mer
499-521
0.009
0
XLOC_013045
hsa-miR-92a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026786
Biotype: transcript isomorph
Gene id: XLOC_013045
Gene Name: XLOC_013045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5093-5115
0.016
0
9mer
5093-5108
0.009
0
6mer
5522-5538
0.005
0
8mer+wobble
2795-2810
0.001
0
RP11-46H11.3
hsa-miR-92a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
402-421
0.012
0
6mer
2793-2805
0.009
0
6mer
484-509
0.009
0
8mer+wobble
1550-1565
0.001
Not Conserved
XLOC_012889
hsa-miR-92a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026570
Biotype: transcript isomorph
Gene id: XLOC_012889
Gene Name: XLOC_012889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1483-1507
0.012
2
6mer
3251-3267
0.007
4
6mer
3152-3177
0.007
4
6mer
272-297
0.004
1
6mer
1334-1359
0.002
1
AC034220.3
hsa-miR-92a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000457998
Biotype: antisense
Gene id: ENSG00000233006
Gene Name: AC034220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-50
0.031
1
LINC00889
hsa-miR-92a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-154
0.018
0
8mer
2120-2144
0.009
0
6mer
419-431
0.004
Not Conserved
CTD-2228A4.1
hsa-miR-92a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606282
Biotype: lincRNA
Gene id: ENSG00000271892
Gene Name: CTD-2228A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-44
0.031
1
LOC101926960
hsa-miR-92a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104636.1
Biotype: lincRNA
Gene id: NR_104636.1 (gene)
Gene Name: LOC101926960
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1573-1598
0.012
2
7mer
1613-1624
0.011
1
6mer
263-274
0.006
0
6mer
1806-1831
0.002
0
XLOC_007475
hsa-miR-92a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016085
Biotype: transcript isomorph
Gene id: XLOC_007475
Gene Name: XLOC_007475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1544-1565
0.019
1
7mer
1476-1500
0.006
0
7mer
505-521
0.006
0
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