LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-108M9.3
hsa-miR-92a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457856
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
425-440
0.032
0
LINC00341
hsa-miR-92a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026779.1
Biotype: sense
Gene id: NR_026779.1 (gene)
Gene Name: LINC00341
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-340
0.026
4
7mer
2047-2068
0.006
2
AC145110.1
hsa-miR-92a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523123
Biotype: lincRNA
Gene id: ENSG00000253490
Gene Name: AC145110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-336
0.029
0
6mer
232-253
0.003
Not Conserved
AC159540.1
hsa-miR-92a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604397
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-433
0.032
0
CTB-5E10.3
hsa-miR-92a-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586297
Biotype: antisense
Gene id: ENSG00000267633
Gene Name: CTB-5E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-401
0.032
0
XLOC_006756
hsa-miR-92a-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014487
Biotype: transcript isomorph
Gene id: XLOC_006756
Gene Name: XLOC_006756
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-336
0.029
0
6mer
232-253
0.003
Not Conserved
XLOC_006645
hsa-miR-92a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014006
Biotype: transcript isomorph
Gene id: XLOC_006645
Gene Name: XLOC_006645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-115
0.012
1
8mer
100-115
0.011
0
8mer+wobble
594-609
0.009
0
LOC100132356
hsa-miR-92a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034127.1
Biotype: antisense
Gene id: NR_034127.1 (gene)
Gene Name: LOC100132356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
221-240
0.012
1
6mer
484-502
0.011
1
6mer
425-442
0.006
1
8mer+wobble
871-886
0.003
0
XLOC_004501
hsa-miR-92a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009477
Biotype: transcript isomorph
Gene id: XLOC_004501
Gene Name: XLOC_004501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-296
0.011
0
7mer
1758-1774
0.011
1
7mer
1241-1262
0.005
2
6mer
602-618
0.005
1
RP11-674E16.4
hsa-miR-92a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000399242
Biotype: sense_intronic
Gene id: ENSG00000214919
Gene Name: RP11-674E16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-303
0.016
0
7mer
603-613
0.012
2
8mer+wobble
1351-1366
0.004
1
RP11-419C23.1
hsa-miR-92a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523411
Biotype: lincRNA
Gene id: ENSG00000254038
Gene Name: RP11-419C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-512
0.028
1
6mer
355-381
0.004
0
NR2F1-AS1
hsa-miR-92a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606696
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2039-2056
0.020
1
7mer
1608-1634
0.007
1
6mer
2343-2360
0.003
1
8mer+wobble
2239-2254
0.002
1
RP11-11N9.4
hsa-miR-92a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520819
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-166
0.026
1
6mer
469-495
0.006
1
RP11-76E17.4
hsa-miR-92a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556763
Biotype: lincRNA
Gene id: ENSG00000258831
Gene Name: RP11-76E17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
833-857
0.032
0
LINC01526
hsa-miR-92a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441949
Biotype: lincRNA
Gene id: ENSG00000224995
Gene Name: LINC01526
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-67
0.032
3
RP11-116O11.1
hsa-miR-92a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510391
Biotype: antisense
Gene id: ENSG00000251294
Gene Name: RP11-116O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1643-1669
0.020
2
7mer
900-920
0.012
3
RP11-250B2.5
hsa-miR-92a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569267
Biotype: lincRNA
Gene id: ENSG00000260645
Gene Name: RP11-250B2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1361-1378
0.015
1
8mer
1476-1494
0.014
1
6mer
1693-1705
0.003
0
XLOC_010415
hsa-miR-92a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021814
Biotype: transcript isomorph
Gene id: XLOC_010415
Gene Name: XLOC_010415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5177-5194
0.020
1
7mer
3677-3696
0.005
4
6mer
4382-4403
0.004
1
6mer
4890-4901
0.003
0
RP11-574O7.1
hsa-miR-92a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518927
Biotype: antisense
Gene id: ENSG00000254041
Gene Name: RP11-574O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
848-866
0.017
14
6mer
688-713
0.009
12
6mer
126-146
0.005
1
ERICH3-AS1
hsa-miR-92a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612390
Biotype: antisense
Gene id: ENSG00000234497
Gene Name: ERICH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4526-4552
0.020
4
7mer
3577-3599
0.005
1
6mer
2613-2626
0.003
3
6mer
1383-1405
0.002
1
7mer
3588-3613
0.002
0
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