LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
AC108056.1
hsa-miR-92a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000442020
Biotype: lincRNA
Gene id: ENSG00000229565
Gene Name: AC108056.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-504
0.034
1
XLOC_007438
hsa-miR-92a-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-333
0.026
0
6mer
966-984
0.004
2
6mer
4594-4610
0.002
1
8mer+wobble
4327-4342
0.002
1
RP11-434I12.2
hsa-miR-92a-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
904-927
0.028
6
8mer+mismatch
698-717
0.005
0
CTD-2574D22.2
hsa-miR-92a-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000450909
Biotype: antisense
Gene id: ENSG00000247735
Gene Name: CTD-2574D22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1368-1383
0.018
0
8mer+wobble
929-944
0.009
1
8mer+wobble
1677-1692
0.005
0
6mer
929-951
0.001
0
RP11-103H7.2
hsa-miR-92a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521428
Biotype: lincRNA
Gene id: ENSG00000253220
Gene Name: RP11-103H7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-485
0.033
1
CTD-2303H24.2
hsa-miR-92a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425211
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4449-4466
0.028
1
6mer
2337-2359
0.003
4
6mer
3823-3836
0.003
0
LINC00560
hsa-miR-92a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564593
Biotype: lincRNA
Gene id: ENSG00000261666
Gene Name: LINC00560
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-320
0.033
0
AC099342.1
hsa-miR-92a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446399
Biotype: lincRNA
Gene id: ENSG00000226097
Gene Name: AC099342.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-287
0.026
2
6mer
21-42
0.007
1
RP11-379K22.2
hsa-miR-92a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558208
Biotype: antisense
Gene id: ENSG00000259175
Gene Name: RP11-379K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-175
0.015
1
6mer
190-208
0.006
3
7mer
1310-1332
0.005
1
8mer
1636-1651
0.004
0
6mer
764-783
0.003
0
AC145110.1
hsa-miR-92a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517491
Biotype: lincRNA
Gene id: ENSG00000253490
Gene Name: AC145110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-311
0.030
0
6mer
207-228
0.003
Not Conserved
XLOC_004800
hsa-miR-92a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010315
Biotype: transcript isomorph
Gene id: XLOC_004800
Gene Name: XLOC_004800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-350
0.011
1
7mer
3902-3913
0.010
1
7mer
3833-3842
0.008
2
6mer
4220-4245
0.002
0
6mer
2523-2534
0.002
0
XLOC_001668
hsa-miR-92a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4856-4860
0.010
1
7mer
4037-4060
0.009
0
7mer
3369-3394
0.008
1
6mer
3316-3334
0.005
1
6mer
4864-4880
0.001
0
KB-1125A3.12
hsa-miR-92a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-144
0.022
0
6mer
122-144
0.003
0
8mer+wobble
4201-4216
0.002
0
6mer
3025-3048
0.002
1
8mer+wobble
6121-6136
0.001
0
6mer
4963-4988
0.001
0
6mer
3881-3895
0.001
0
AC097499.1
hsa-miR-92a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430692
Biotype: lincRNA
Gene id: ENSG00000235491
Gene Name: AC097499.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-231
0.020
1
7mer
458-479
0.013
1
RP11-760D2.5
hsa-miR-92a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-95
0.014
Not Conserved
8mer+wobble
692-707
0.014
0
7mer
1670-1689
0.005
Not Conserved
XLOC_013285
hsa-miR-92a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027283
Biotype: transcript isomorph
Gene id: XLOC_013285
Gene Name: XLOC_013285
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
930-951
0.033
0
LINC00910
hsa-miR-92a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592135
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2326-2348
0.027
0
8mer+wobble
1313-1328
0.005
0
6mer
1306-1328
0.001
1
NPSR1-AS1
hsa-miR-92a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419766
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-23
0.021
1
6mer
4618-4643
0.003
Not Conserved
6mer
3823-3839
0.003
1
6mer
1796-1813
0.003
1
6mer
3603-3622
0.003
0
RP11-251P6.1
hsa-miR-92a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624489
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-62
0.029
2
6mer
254-276
0.003
0
XLOC_005067
hsa-miR-92a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010539
Biotype: transcript isomorph
Gene id: XLOC_005067
Gene Name: XLOC_005067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-598
0.032
1
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