LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-422P24.11
hsa-miR-92a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608236
Biotype: lincRNA
Gene id: ENSG00000272654
Gene Name: RP11-422P24.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-483
0.034
1
RP11-143J24.1
hsa-miR-92a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561392
Biotype: lincRNA
Gene id: ENSG00000259647
Gene Name: RP11-143J24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-23
0.034
0
XLOC_011492
hsa-miR-92a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023690
Biotype: transcript isomorph
Gene id: XLOC_011492
Gene Name: XLOC_011492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-109
0.017
1
7mer
812-825
0.017
0
RP11-445L13__B.3
hsa-miR-92a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451856
Biotype: antisense
Gene id: ENSG00000227215
Gene Name: RP11-445L13__B.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
340-363
0.034
1
AL157359.4
hsa-miR-92a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440372
Biotype: lincRNA
Gene id: ENSG00000232193
Gene Name: AL157359.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-624
0.021
0
8mer
629-654
0.014
1
RP11-328D5.1
hsa-miR-92a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435542
Biotype: lincRNA
Gene id: ENSG00000226202
Gene Name: RP11-328D5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-115
0.020
1
6mer
80-95
0.009
5
6mer
402-416
0.005
2
SOX9-AS1
hsa-miR-92a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588177
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-208
0.034
1
MIR663AHG
hsa-miR-92a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000597267
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-514
0.022
1
8mer+wobble
499-515
0.012
1
RP1-309I22.2
hsa-miR-92a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11801-11825
0.014
1
7mer
7572-7586
0.004
2
8mer
12627-12647
0.003
0
6mer
16389-16407
0.002
2
6mer
11302-11325
0.002
0
6mer
981-1002
0.002
1
6mer
16067-16086
0.002
1
6mer
5857-5878
0.001
1
6mer
9981-9998
0.001
1
6mer
4478-4500
0.001
1
6mer
8534-8556
0.001
0
6mer
16461-16484
0.001
1
CTC-436P18.1
hsa-miR-92a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109908.1
Biotype: antisense
Gene id: NR_109908.1 (gene)
Gene Name: CTC-436P18.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-570
0.034
0
RP11-392O17.2
hsa-miR-92a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612055
Biotype: lincRNA
Gene id: ENSG00000277007
Gene Name: RP11-392O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2472-2493
0.031
5
8mer+wobble
215-230
0.004
0
XLOC_008072
hsa-miR-92a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-387
0.013
0
7mer
3564-3578
0.008
1
7mer
1155-1178
0.006
1
6mer
101-116
0.004
1
6mer
1687-1707
0.002
1
6mer
1290-1300
0.001
0
C1QTNF3-AMACR
hsa-miR-92a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-601
0.032
2
6mer
2550-2567
0.002
4
XLOC_011448
hsa-miR-92a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9023-9036
0.008
1
7mer
10125-10146
0.008
1
7mer
8818-8833
0.007
1
6mer
484-501
0.004
1
6mer
1366-1389
0.002
Not Conserved
8mer+wobble
1209-1224
0.002
1
8mer+wobble
2659-2674
0.002
1
7mer
2652-2674
0.001
1
XLOC_006118
hsa-miR-92a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-162
0.018
0
8mer
3940-3955
0.007
0
8mer+wobble
890-906
0.003
0
8mer+wobble
1194-1209
0.003
0
6mer
171-184
0.003
Not Conserved
RP11-646E18.2
hsa-miR-92a-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492416
Biotype: lincRNA
Gene id: ENSG00000238837
Gene Name: RP11-646E18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
548-569
0.034
0
LINC00320
hsa-miR-92a-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000452561
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-405
0.028
6
6mer
273-299
0.006
1
LINC01470
hsa-miR-92a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522300
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-798
0.015
1
7mer
150-166
0.012
0
7mer
711-731
0.006
0
RP11-545I5.3
hsa-miR-92a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606388
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3265-3286
0.015
3
7mer
591-602
0.012
1
7mer
1663-1683
0.007
4
PRNCR1
hsa-miR-92a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11897-11916
0.016
1
7mer
11641-11666
0.006
1
6mer
12465-12484
0.004
1
7mer
5046-5068
0.002
1
6mer
8698-8702
0.002
2
6mer
3680-3695
0.002
1
7mer
8692-8709
0.001
0
6mer
6513-6530
0.001
0
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