LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
TEX41
hsa-miR-92a-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445791
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4573-4594
0.019
1
7mer
3528-3547
0.006
1
6mer
790-816
0.003
3
6mer
2011-2030
0.003
3
8mer+wobble
1386-1401
0.002
1
6mer
1055-1076
0.002
1
XLOC_012669
hsa-miR-92a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026192
Biotype: transcript isomorph
Gene id: XLOC_012669
Gene Name: XLOC_012669
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-484
0.035
3
LINC00858
hsa-miR-92a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415469
Biotype: lincRNA
Gene id: ENSG00000229404
Gene Name: LINC00858
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1736-1754
0.025
1
7mer
2337-2361
0.010
1
INTS6-AS1
hsa-miR-92a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608520
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.029
0
6mer
84-98
0.006
2
TCL6
hsa-miR-92a-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000460130
Biotype: lincRNA
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-32
0.020
0
7mer
790-812
0.015
1
LINC01105
hsa-miR-92a-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431182
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
544-565
0.035
0
CTD-2130O13.1
hsa-miR-92a-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586905
Biotype: lincRNA
Gene id: ENSG00000267761
Gene Name: CTD-2130O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-483
0.035
3
XLOC_013237
hsa-miR-92a-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026801
Biotype: transcript isomorph
Gene id: XLOC_013237
Gene Name: XLOC_013237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-291
0.035
1
XLOC_010778
hsa-miR-92a-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022446
Biotype: transcript isomorph
Gene id: XLOC_010778
Gene Name: XLOC_010778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-608
0.035
7
RP11-167J8.3
hsa-miR-92a-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532530
Biotype: lincRNA
Gene id: ENSG00000254972
Gene Name: RP11-167J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-47
0.035
3
INTS6-AS1
hsa-miR-92a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610018
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.029
0
6mer
84-98
0.006
2
XLOC_009200
hsa-miR-92a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019375
Biotype: transcript isomorph
Gene id: XLOC_009200
Gene Name: XLOC_009200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-311
0.030
1
6mer
307-327
0.005
1
DCTN1-AS1
hsa-miR-92a-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024463.1
Biotype: antisense
Gene id: NR_024463.1 (gene)
Gene Name: DCTN1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
1
7mer
1963-1986
0.012
1
6mer
1702-1721
0.004
0
6mer
963-987
0.003
0
XLOC_009827
hsa-miR-92a-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020510
Biotype: transcript isomorph
Gene id: XLOC_009827
Gene Name: XLOC_009827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-49
0.021
9
6mer
248-268
0.008
5
6mer
214-224
0.006
3
RP11-666F17.1
hsa-miR-92a-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000414098
Biotype: antisense
Gene id: ENSG00000234428
Gene Name: RP11-666F17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
733-748
0.028
1
6mer
797-803
0.007
1
NDUFA6-AS1
hsa-miR-92a-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000617009
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-75
0.027
0
6mer
64-82
0.008
0
DCTN1-AS1
hsa-miR-92a-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437991
Biotype: antisense
Gene id: ENSG00000237737
Gene Name: DCTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
1
7mer
1963-1986
0.012
1
6mer
1702-1721
0.004
0
6mer
963-987
0.003
0
LINC01021
hsa-miR-92a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510165
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-615
0.032
2
6mer
210-235
0.003
0
ERVK13-1
hsa-miR-92a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040023.1
Biotype: lincRNA
Gene id: NR_040023.1 (gene)
Gene Name: ERVK13-1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-47
0.026
Not Conserved
8mer+wobble
7948-7964
0.007
1
6mer
3310-3322
0.001
Not Conserved
RP11-654D12.3
hsa-miR-92a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547094
Biotype: lincRNA
Gene id: ENSG00000257725
Gene Name: RP11-654D12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-50
0.021
9
6mer
337-357
0.007
5
6mer
303-313
0.006
3
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