LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-292D4.3
hsa-miR-92a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565538
Biotype: lincRNA
Gene id: ENSG00000260090
Gene Name: RP11-292D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3140-3150
0.017
3
7mer
1021-1040
0.012
0
7mer
2044-2062
0.006
0
6mer
1087-1104
0.002
0
RP11-456O19.2
hsa-miR-92a-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589450
Biotype: lincRNA
Gene id: ENSG00000267057
Gene Name: RP11-456O19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-594
0.023
1
7mer
178-202
0.014
0
GTF3C2-AS1
hsa-miR-92a-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588707
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
330-345
0.023
0
7mer
446-468
0.011
1
6mer
446-461
0.002
1
ZNF571-AS1
hsa-miR-92a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586139
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1094-1118
0.036
1
RP11-321M21.1
hsa-miR-92a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579278
Biotype: lincRNA
Gene id: ENSG00000266774
Gene Name: RP11-321M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19-37
0.013
7
6mer
44-69
0.010
6
6mer
363-384
0.008
6
6mer
620-641
0.005
2
RP11-252P19.1
hsa-miR-92a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000435810
Biotype: antisense
Gene id: ENSG00000236627
Gene Name: RP11-252P19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-464
0.036
0
CTD-3193K9.11
hsa-miR-92a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613683
Biotype: lincRNA
Gene id: ENSG00000273650
Gene Name: CTD-3193K9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-169
0.036
3
XLOC_005286
hsa-miR-92a-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011812
Biotype: transcript isomorph
Gene id: XLOC_005286
Gene Name: XLOC_005286
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-119
0.019
1
8mer
162-182
0.017
0
FAM182B
hsa-miR-92a-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027061.2
Biotype: sense
Gene id: NR_027061.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-334
0.036
0
RP11-346C20.4
hsa-miR-92a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000606272
Biotype: lincRNA
Gene id: ENSG00000272250
Gene Name: RP11-346C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-341
0.025
5
6mer
415-435
0.012
5
XLOC_008024
hsa-miR-92a-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017001
Biotype: transcript isomorph
Gene id: XLOC_008024
Gene Name: XLOC_008024
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3139-3164
0.009
2
8mer
713-728
0.008
0
8mer+wobble
42-57
0.006
1
6mer
2576-2599
0.005
1
6mer
2089-2104
0.004
1
7mer
2255-2278
0.003
Not Conserved
6mer
728-751
0.001
Not Conserved
RP11-379B18.5
hsa-miR-92a-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594843
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-28
0.036
3
RP5-956O18.2
hsa-miR-92a-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440729
Biotype: antisense
Gene id: ENSG00000227006
Gene Name: RP5-956O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-226
0.030
1
6mer
406-410
0.006
1
XLOC_009034
hsa-miR-92a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-230
0.036
3
RP11-114H24.6
hsa-miR-92a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562716
Biotype: antisense
Gene id: ENSG00000259792
Gene Name: RP11-114H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-460
0.036
1
LINC01002
hsa-miR-92a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
886-913
0.021
1
7mer
504-519
0.014
1
RP4-798A10.7
hsa-miR-92a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562878
Biotype: lincRNA
Gene id: ENSG00000261135
Gene Name: RP4-798A10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1087-1092
0.036
1
CTD-2132N18.4
hsa-miR-92a-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602842
Biotype: sense_intronic
Gene id: ENSG00000270010
Gene Name: CTD-2132N18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-46
0.029
2
6mer
426-448
0.007
2
TPTEP1
hsa-miR-92a-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-313
0.036
1
RP11-119D9.1
hsa-miR-92a-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529069
Biotype: lincRNA
Gene id: ENSG00000251637
Gene Name: RP11-119D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-571
0.036
3
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