LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009599
hsa-miR-92a-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019800
Biotype: transcript isomorph
Gene id: XLOC_009599
Gene Name: XLOC_009599
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-189
0.038
1
KB-1043D8.8
hsa-miR-92a-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602571
Biotype: lincRNA
Gene id: ENSG00000270131
Gene Name: KB-1043D8.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-39
0.038
1
LINC01194
hsa-miR-92a-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513051
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-209
0.034
1
6mer
160-182
0.004
0
XLOC_013703
hsa-miR-92a-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-568
0.038
0
CTD-2561J22.5
hsa-miR-92a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
609-634
0.028
1
8mer+wobble
1726-1741
0.005
1
6mer
2978-2989
0.004
1
RP11-94M14.2
hsa-miR-92a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422206
Biotype: lincRNA
Gene id: ENSG00000224750
Gene Name: RP11-94M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1890-1912
0.015
0
7mer
517-539
0.011
1
7mer
237-260
0.008
1
6mer
926-949
0.002
1
6mer
946-969
0.001
0
RP11-93K22.6
hsa-miR-92a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000509201
Biotype: antisense
Gene id: ENSG00000250643
Gene Name: RP11-93K22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-45
0.037
0
ZNF571-AS1
hsa-miR-92a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585578
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1211
0.034
1
6mer
476-500
0.003
1
RP4-671O14.6
hsa-miR-92a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-151
0.009
0
8mer
129-144
0.008
0
7mer
13252-13279
0.008
1
8mer+wobble
14007-14022
0.008
1
6mer
4914-4934
0.002
0
8mer+wobble
12828-12843
0.001
Not Conserved
6mer
11591-11611
0.001
0
RP11-360L9.7
hsa-miR-92a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524133
Biotype: antisense
Gene id: ENSG00000253174
Gene Name: RP11-360L9.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-254
0.037
Not Conserved
XLOC_006124
hsa-miR-92a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014152
Biotype: transcript isomorph
Gene id: XLOC_006124
Gene Name: XLOC_006124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-335
0.037
1
RP11-15H20.6
hsa-miR-92a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
333-349
0.020
1
8mer+wobble
985-1004
0.018
1
ZNF571-AS1
hsa-miR-92a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038247.1
Biotype: sense
Gene id: NR_038247.1 (gene)
Gene Name: ZNF571-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1185-1209
0.034
1
6mer
474-498
0.003
1
XLOC_000264
hsa-miR-92a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000048
Biotype: transcript isomorph
Gene id: XLOC_000264
Gene Name: XLOC_000264
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1946-1971
0.037
0
LINC01194
hsa-miR-92a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505196
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-209
0.034
1
6mer
160-182
0.003
0
XLOC_012740
hsa-miR-92a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026391
Biotype: transcript isomorph
Gene id: XLOC_012740
Gene Name: XLOC_012740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-498
0.037
1
AC023347.1
hsa-miR-92a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419223
Biotype: lincRNA
Gene id: ENSG00000235774
Gene Name: AC023347.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-214
0.020
3
7mer
404-413
0.017
1
XLOC_011088
hsa-miR-92a-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022379
Biotype: transcript isomorph
Gene id: XLOC_011088
Gene Name: XLOC_011088
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1082-1102
0.032
4
6mer
1485-1506
0.005
Not Conserved
RP11-265N6.1
hsa-miR-92a-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564805
Biotype: antisense
Gene id: ENSG00000261684
Gene Name: RP11-265N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-482
0.037
3
LINC01004
hsa-miR-92a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8594-8615
0.016
0
8mer
3979-4001
0.011
3
6mer
909-929
0.003
1
7mer
6133-6148
0.003
Not Conserved
6mer
5047-5064
0.002
0
8mer+wobble
4888-4903
0.001
0
6mer
1864-1882
0.001
0
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