LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-61G19.1
hsa-miR-92a-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505494
Biotype: lincRNA
Gene id: ENSG00000249334
Gene Name: RP11-61G19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-491
0.039
2
RP11-96K19.4
hsa-miR-92a-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5805-5832
0.026
0
6mer
5885-5894
0.007
0
6mer
4374-4387
0.003
0
6mer
5202-5210
0.003
Not Conserved
XLOC_006242
hsa-miR-92a-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1730-1745
0.035
1
8mer+wobble
1345-1360
0.005
0
LINC00094
hsa-miR-92a-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599836
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1656-1671
0.029
7
8mer+wobble
1205-1220
0.008
1
6mer
1205-1227
0.002
1
XLOC_010829
hsa-miR-92a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022504
Biotype: transcript isomorph
Gene id: XLOC_010829
Gene Name: XLOC_010829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3113-3119
0.032
1
6mer
3154-3165
0.004
1
6mer
2182-2186
0.003
0
RP11-727A23.4
hsa-miR-92a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528133
Biotype: sense_overlapping
Gene id: ENSG00000254676
Gene Name: RP11-727A23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-888
0.039
1
RP11-1038A11.3
hsa-miR-92a-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537714
Biotype: lincRNA
Gene id: ENSG00000256417
Gene Name: RP11-1038A11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-43
0.039
1
RP11-486O12.2
hsa-miR-92a-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000498967
Biotype: lincRNA
Gene id: ENSG00000247373
Gene Name: RP11-486O12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-216
0.015
0
8mer
7258-7283
0.011
Not Conserved
6mer
59-68
0.004
0
8mer
4016-4031
0.003
0
8mer
1999-2014
0.002
0
8mer+wobble
2309-2324
0.001
0
6mer
7459-7482
0.001
Not Conserved
8mer+wobble
4325-4340
0.001
0
6mer
5877-5892
0.001
0
CTB-33O18.3
hsa-miR-92a-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519897
Biotype: antisense
Gene id: ENSG00000253955
Gene Name: CTB-33O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1361-1380
0.030
1
6mer
1396-1400
0.009
1
LINC01470
hsa-miR-92a-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506723
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
847-867
0.012
1
7mer
219-235
0.011
0
8mer
1904-1919
0.010
0
7mer
780-800
0.005
0
LINC00861
hsa-miR-92a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5238-5256
0.024
3
7mer
1391-1405
0.005
1
6mer
467-492
0.004
0
6mer
419-440
0.003
0
6mer
2113-2135
0.003
1
MGC27382
hsa-miR-92a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436742
Biotype: lincRNA
Gene id: ENSG00000237413
Gene Name: MGC27382
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1732-1757
0.039
0
CTA-796E4.5
hsa-miR-92a-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18558-18570
0.006
1
7mer
21481-21508
0.005
1
6mer
527-546
0.005
3
7mer
23311-23336
0.005
0
7mer
2350-2371
0.004
1
6mer
17340-17358
0.002
3
6mer
3590-3613
0.002
1
6mer
4300-4316
0.002
1
6mer
14760-14782
0.001
0
7mer
29096-29120
0.001
Not Conserved
6mer
6628-6653
0.001
1
6mer
6360-6375
0.001
Not Conserved
6mer
13146-13172
0.001
Not Conserved
6mer
17948-17968
0.001
0
XLOC_003787
hsa-miR-92a-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008337
Biotype: transcript isomorph
Gene id: XLOC_003787
Gene Name: XLOC_003787
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-621
0.036
1
6mer
332-355
0.003
1
RP11-147L13.14
hsa-miR-92a-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612725
Biotype: lincRNA
Gene id: ENSG00000278740
Gene Name: RP11-147L13.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-274
0.038
0
LINC00365
hsa-miR-92a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413591
Biotype: lincRNA
Gene id: ENSG00000224511
Gene Name: LINC00365
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-333
0.018
2
7mer
1063-1088
0.010
1
7mer
156-183
0.010
1
MANEA-AS1
hsa-miR-92a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564541
Biotype: antisense
Gene id: ENSG00000261366
Gene Name: MANEA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-230
0.028
1
7mer
159-179
0.010
0
RP11-585P4.6
hsa-miR-92a-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617300
Biotype: sense_intronic
Gene id: ENSG00000273987
Gene Name: RP11-585P4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
608-631
0.019
1
7mer
141-153
0.012
Not Conserved
6mer
146-163
0.007
1
FLVCR1-AS1
hsa-miR-92a-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000356684
Biotype: lincRNA
Gene id: ENSG00000198468
Gene Name: FLVCR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2169-2184
0.025
0
7mer
1547-1567
0.004
0
6mer
1687-1710
0.004
1
8mer
1104-1119
0.004
0
6mer
944-963
0.001
0
RP11-168P8.5
hsa-miR-92a-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438454
Biotype: lincRNA
Gene id: ENSG00000236769
Gene Name: RP11-168P8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-179
0.038
4
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