LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
CTD-3162L10.1
hsa-miR-92a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1839-1855
0.035
1
8mer
220-234
0.006
Not Conserved
GCSHP3
hsa-miR-92a-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453039
Biotype: antisense
Gene id: ENSG00000231955
Gene Name: GCSHP3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1198-1222
0.041
0
RP11-744K17.2
hsa-miR-92a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2821-2843
0.026
0
7mer
3456-3479
0.016
0
RP11-545I5.3
hsa-miR-92a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-170
0.017
1
7mer
2833-2854
0.015
3
7mer
1231-1251
0.009
4
RP11-379B18.5
hsa-miR-92a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000617582
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-22
0.041
3
RP11-90P5.5
hsa-miR-92a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000476186
Biotype: antisense
Gene id: ENSG00000240015
Gene Name: RP11-90P5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
528-543
0.014
1
8mer
219-234
0.013
0
6mer
152-171
0.008
0
7mer
219-241
0.007
Not Conserved
RP1-46F2.3
hsa-miR-92a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546852
Biotype: lincRNA
Gene id: ENSG00000258240
Gene Name: RP1-46F2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-564
0.021
0
7mer
219-241
0.010
0
8mer
226-241
0.010
0
RP11-90D4.3
hsa-miR-92a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539795
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-570
0.041
3
XLOC_009279
hsa-miR-92a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019476
Biotype: transcript isomorph
Gene id: XLOC_009279
Gene Name: XLOC_009279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2864-2883
0.039
Not Conserved
6mer
1111-1124
0.002
1
RP11-90D4.3
hsa-miR-92a-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535746
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-571
0.041
3
TSC22D1-AS1
hsa-miR-92a-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038381.1
Biotype: antisense
Gene id: NR_038381.1 (gene)
Gene Name: TSC22D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-217
0.033
7
6mer
2673-2683
0.005
1
6mer
1762-1778
0.003
3
TSC22D1-AS1
hsa-miR-92a-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616360
Biotype: antisense
Gene id: ENSG00000278156
Gene Name: TSC22D1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-220
0.033
7
6mer
2676-2686
0.005
1
6mer
1765-1781
0.003
3
XLOC_007938
hsa-miR-92a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017146
Biotype: transcript isomorph
Gene id: XLOC_007938
Gene Name: XLOC_007938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
363-374
0.041
1
AF131215.9
hsa-miR-92a-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602575
Biotype: sense_intronic
Gene id: ENSG00000269918
Gene Name: AF131215.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-505
0.027
1
7mer
159-183
0.010
0
6mer
1324-1339
0.003
0
KCNMA1-AS1
hsa-miR-92a-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600782
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1196
0.040
1
LINC00910
hsa-miR-92a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592094
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
907-929
0.024
0
8mer+wobble
34-49
0.012
0
6mer
27-49
0.005
1
AC005550.3
hsa-miR-92a-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451240
Biotype: antisense
Gene id: ENSG00000237070
Gene Name: AC005550.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3576-3598
0.027
1
7mer
1369-1383
0.009
2
6mer
587-613
0.002
2
6mer
459-483
0.002
1
LOC285000
hsa-miR-92a-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038891.1
Biotype: lincRNA
Gene id: NR_038891.1 (gene)
Gene Name: LOC285000
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1213-1232
0.040
2
RP11-804F13.1
hsa-miR-92a-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549364
Biotype: lincRNA
Gene id: ENSG00000258119
Gene Name: RP11-804F13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-105
0.034
3
6mer
174-188
0.006
3
XLOC_010037
hsa-miR-92a-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020749
Biotype: transcript isomorph
Gene id: XLOC_010037
Gene Name: XLOC_010037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-164
0.034
0
6mer
175-186
0.005
0
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