LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
PABPC1P1
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000506347
Biotype: processed_pseudogene
Gene id: ENSG00000231707
Gene Name: PABPC1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:39973767-39973795
exon
HITS-CLIP
DIRECT
LncBasev2
PABPC1P4
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000539977
Biotype: processed_pseudogene
Gene id: ENSG00000255642
Gene Name: PABPC1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:63823198-63823226
exon
HITS-CLIP
DIRECT
LncBasev2
12:63823360-63823388
exon
HITS-CLIP
DIRECT
LncBasev2
PLEKHM1P
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582986
Biotype: processed_transcript
Gene id: ENSG00000214176
Gene Name: PLEKHM1P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:64792402-64792430
exon
HITS-CLIP
DIRECT
LncBasev2
PPIEL
hsa-miR-708-5p
0.365
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000440190
Biotype: antisense
Gene id: ENSG00000182109
Gene Name: PPIEL
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:39546008-39546036
exon
HITS-CLIP
DIRECT
LncBasev2
PPP1R14BP3
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509033
Biotype: processed_pseudogene
Gene id: ENSG00000179967
Gene Name: PPP1R14BP3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:139115071-139115099
exon
HITS-CLIP
DIRECT
LncBasev2
PSAT1P2
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000426107
Biotype: processed_pseudogene
Gene id: ENSG00000232144
Gene Name: PSAT1P2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:62552461-62552489
exon
HITS-CLIP
DIRECT
LncBasev2
PVRIG2P
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000435460
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000235333
Gene Name: PVRIG2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
7:100353069-100353097
exon
HITS-CLIP
DIRECT
LncBasev2
RAB30-AS1
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000530270
Biotype: lincRNA
Gene id: ENSG00000246067
Gene Name: RAB30-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:83073839-83073867
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-104D3.2
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000430498
Biotype: processed_pseudogene
Gene id: ENSG00000236468
Gene Name: RP11-104D3.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:199387968-199387996
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-111F5.8
hsa-miR-708-5p
0.520
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:62390725-62390753
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-126K1.9
hsa-miR-708-5p
0.774
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609583
Biotype: lincRNA
Gene id: ENSG00000273481
Gene Name: RP11-126K1.9
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:151328138-151328166
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-129H15.4
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000403062
Biotype: processed_pseudogene
Gene id: ENSG00000217139
Gene Name: RP11-129H15.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:121683655-121683683
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-137N23.1
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000537438
Biotype: processed_pseudogene
Gene id: ENSG00000257043
Gene Name: RP11-137N23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:18665393-18665421
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-145M9.4
hsa-miR-708-5p
0.584
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000595265
Biotype: lincRNA
Gene id: ENSG00000269728
Gene Name: RP11-145M9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:179397322-179397350
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-147L13.13
hsa-miR-708-5p
0.582
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000622750
Biotype: lincRNA
Gene id: ENSG00000277476
Gene Name: RP11-147L13.13
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:68135126-68135154
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-158H5.7
hsa-miR-708-5p
0.745
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000586922
Biotype: lincRNA
Gene id: ENSG00000268573
Gene Name: RP11-158H5.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:35283947-35283975
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-159D12.2
hsa-miR-708-5p
0.490
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000585065
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
17:57994500-57994528
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-197N18.2
hsa-miR-708-5p
0.582
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000540866
Biotype: retained_intron
Gene id: ENSG00000256028
Gene Name: RP11-197N18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:122981642-122981670
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:122981642-122981670
exon
HITS-CLIP
DIRECT
LncBasev2
12:122981612-122981640
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-21G15.1
hsa-miR-708-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000581724
Biotype: processed_transcript
Gene id: ENSG00000264714
Gene Name: RP11-21G15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
18:10727529-10727557
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-242D8.1
hsa-miR-708-5p
0.465
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000590740
Biotype: lincRNA
Gene id: ENSG00000267002
Gene Name: RP11-242D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:43167188-43167216
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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