LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
CTD-2521M24.9
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599975
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-120
0.022
0
6mer
125-141
0.004
1
SNORD3D
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573866
Biotype: lincRNA
Gene id: ENSG00000262202
Gene Name: SNORD3D
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
78-100
0.023
0
6mer
350-371
0.002
Not Conserved
HCG18
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4260-4283
0.014
1
7mer
3656-3674
0.005
0
6mer
3861-3877
0.003
1
6mer
1870-1883
0.002
0
6mer
3631-3644
0.002
Not Conserved
6mer
2800-2821
0.001
0
FAM95B1
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590254
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-179
0.025
0
LINC01234
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551982
Biotype: lincRNA
Gene id: ENSG00000249550
Gene Name: LINC01234
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-630
0.020
0
6mer
543-553
0.005
2
XLOC_006491
hsa-miR-708-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014334
Biotype: transcript isomorph
Gene id: XLOC_006491
Gene Name: XLOC_006491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
79-101
0.025
1
RP11-214O1.1
hsa-miR-708-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571192
Biotype: lincRNA
Gene id: ENSG00000262786
Gene Name: RP11-214O1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-953
0.007
0
6mer
66-86
0.006
Not Conserved
7mer
1653-1673
0.003
1
6mer
627-646
0.003
0
6mer
1128-1153
0.002
0
7mer
1438-1462
0.002
Not Conserved
6mer
915-941
0.001
1
CTD-2521M24.9
hsa-miR-708-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000500836
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-209
0.019
0
6mer
1242-1256
0.004
Not Conserved
6mer
214-230
0.003
1
CTC-251D13.1
hsa-miR-708-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606930
Biotype: antisense
Gene id: ENSG00000271795
Gene Name: CTC-251D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-137
0.013
0
9mer
593-610
0.011
2
6mer
1587-1611
0.001
2
RP11-349K16.1
hsa-miR-708-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543651
Biotype: lincRNA
Gene id: ENSG00000256643
Gene Name: RP11-349K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-244
0.025
Not Conserved
MIR4697HG
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
70-90
0.014
7
8mer
3943-3961
0.004
1
6mer
4853-4879
0.004
4
6mer
1595-1606
0.002
2
7mer
3841-3866
0.002
1
RP11-536I6.2
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000525575
Biotype: lincRNA
Gene id: ENSG00000255021
Gene Name: RP11-536I6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-217
0.025
0
CTD-2195M15.3
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607594
Biotype: lincRNA
Gene id: ENSG00000271766
Gene Name: CTD-2195M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-118
0.025
1
AP001476.2
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451618
Biotype: lincRNA
Gene id: ENSG00000224413
Gene Name: AP001476.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1755-1771
0.018
1
6mer
1797-1820
0.008
1
LINC00937
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536560
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-79
0.020
2
6mer
73-89
0.005
0
XLOC_013597
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027874
Biotype: transcript isomorph
Gene id: XLOC_013597
Gene Name: XLOC_013597
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2805-2829
0.008
2
8mer
715-730
0.005
0
8mer
602-621
0.004
0
6mer
2547-2561
0.002
1
6mer
1903-1921
0.002
1
6mer
977-993
0.001
0
6mer
1062-1075
0.001
0
6mer
1026-1037
0.001
0
AC061992.2
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586321
Biotype: lincRNA
Gene id: ENSG00000267737
Gene Name: AC061992.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-626
0.017
3
6mer
670-691
0.005
5
6mer
445-466
0.003
1
XLOC_014159
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029516
Biotype: transcript isomorph
Gene id: XLOC_014159
Gene Name: XLOC_014159
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
491-501
0.007
3
6mer
2323-2341
0.005
1
6mer
2352-2371
0.004
1
6mer
291-314
0.004
0
6mer
359-380
0.003
0
7mer
670-685
0.002
1
AC004951.6
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-459
0.025
0
RP11-142C4.6
hsa-miR-708-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033853.2
Biotype: antisense
Gene id: NR_033853.2 (gene)
Gene Name: RP11-142C4.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2519-2535
0.022
0
7mer
1386-1405
0.003
0
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