LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001412
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002863
Biotype: transcript isomorph
Gene id: XLOC_001412
Gene Name: XLOC_001412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3466-3491
0.014
4
6mer
3614-3629
0.004
5
6mer
604-627
0.002
2
6mer
598-619
0.002
0
6mer
1928-1950
0.002
1
6mer
2430-2443
0.001
0
LINC01011
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026856.1
Biotype: sense
Gene id: NR_026856.1 (gene)
Gene Name: LINC01011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1497
0.019
0
8mer+mismatch
889-907
0.004
1
6mer
1114-1138
0.003
0
CTC-276P9.4
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000620001
Biotype: antisense
Gene id: ENSG00000277619
Gene Name: CTC-276P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
254-268
0.010
6
8mer
1254-1274
0.009
3
6mer
612-632
0.004
3
6mer
980-993
0.003
2
XLOC_003884
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008438
Biotype: transcript isomorph
Gene id: XLOC_003884
Gene Name: XLOC_003884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.026
0
RP1-302D9.1
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000447396
Biotype: lincRNA
Gene id: ENSG00000228622
Gene Name: RP1-302D9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-158
0.012
1
6mer
94-110
0.007
2
7mer
348-359
0.006
0
XLOC_003235
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-677
0.005
0
7mer
1332-1346
0.005
1
6mer
6306-6320
0.004
1
6mer
5970-5987
0.003
1
6mer
2773-2786
0.002
1
6mer
4133-4158
0.002
1
7mer
4672-4690
0.002
1
6mer
3411-3435
0.002
1
6mer
3835-3859
0.001
0
6mer
4003-4023
0.001
Not Conserved
TMEM44-AS1
hsa-miR-708-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047574.1
Biotype: antisense
Gene id: NR_047574.1 (gene)
Gene Name: TMEM44-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1336-1356
0.019
1
6mer
334-347
0.003
1
6mer
323-341
0.003
0
CTD-2521M24.9
hsa-miR-708-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598356
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-390
0.022
0
6mer
395-411
0.003
1
RMDN2-AS1
hsa-miR-708-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601029
Biotype: antisense
Gene id: ENSG00000235848
Gene Name: RMDN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
553-568
0.023
2
6mer
291-312
0.002
2
RP11-543H12.1
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547123
Biotype: antisense
Gene id: ENSG00000258026
Gene Name: RP11-543H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-229
0.021
0
6mer
309-323
0.004
1
CTD-2521M24.9
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601007
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-153
0.022
0
6mer
158-174
0.003
1
XLOC_001195
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9108-9124
0.005
0
6mer
327-352
0.004
3
6mer
800-827
0.002
1
6mer
4432-4454
0.002
2
6mer
1358-1374
0.002
1
6mer
6070-6097
0.002
1
6mer
2778-2797
0.002
1
6mer
3834-3857
0.002
1
6mer
3035-3050
0.001
1
6mer
3722-3743
0.001
1
6mer
4287-4310
0.001
2
6mer
2334-2353
0.001
0
7mer
3688-3708
0.001
0
RP11-146D12.2
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588568
Biotype: processed_transcript
Gene id: ENSG00000240240
Gene Name: RP11-146D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
366-381
0.025
1
TMEM44-AS1
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047573.1
Biotype: antisense
Gene id: NR_047573.1 (gene)
Gene Name: TMEM44-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1340-1360
0.019
1
6mer
338-351
0.003
1
6mer
327-345
0.003
0
CTD-2383M3.1
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501397
Biotype: antisense
Gene id: ENSG00000248027
Gene Name: CTD-2383M3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1698-1716
0.021
4
7mer
79-94
0.005
1
LINC00563
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000566370
Biotype: lincRNA
Gene id: ENSG00000261097
Gene Name: LINC00563
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1003-1018
0.025
1
XLOC_006525
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014353
Biotype: transcript isomorph
Gene id: XLOC_006525
Gene Name: XLOC_006525
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-462
0.015
1
6mer
266-289
0.006
2
6mer
896-912
0.005
2
XLOC_013826
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028717
Biotype: transcript isomorph
Gene id: XLOC_013826
Gene Name: XLOC_013826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-166
0.017
1
6mer
685-707
0.008
1
CTD-3154N5.1
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565737
Biotype: antisense
Gene id: ENSG00000260919
Gene Name: CTD-3154N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-158
0.019
1
7mer
40-57
0.007
0
FOXN3-AS2
hsa-miR-708-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-557
0.012
5
6mer
88-113
0.010
5
6mer
172-188
0.004
2
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