LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LINC01119
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000468141
Biotype: lincRNA
Gene id: ENSG00000239332
Gene Name: LINC01119
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-111
0.015
1
6mer
2070-2091
0.007
1
7mer
1276-1300
0.004
1
TEX41
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451774
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1652-1672
0.012
1
7mer
227-252
0.008
0
6mer
96-113
0.003
0
6mer
326-348
0.002
0
TTTY15
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
126-136
0.019
0
6mer
2626-2648
0.007
0
XLOC_011980
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024701
Biotype: transcript isomorph
Gene id: XLOC_011980
Gene Name: XLOC_011980
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-60
0.026
2
XLOC_009681
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020350
Biotype: transcript isomorph
Gene id: XLOC_009681
Gene Name: XLOC_009681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-893
0.018
1
6mer
884-907
0.008
2
XLOC_008295
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
126-136
0.019
0
6mer
2626-2648
0.007
0
RP5-1198O20.4
hsa-miR-708-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-573
0.026
1
RP11-15B24.5
hsa-miR-708-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585511
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
524-547
0.026
0
RP11-280G9.1
hsa-miR-708-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505627
Biotype: lincRNA
Gene id: ENSG00000251127
Gene Name: RP11-280G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2585-2608
0.014
0
7mer
1681-1703
0.007
2
6mer
769-787
0.005
2
FAM95B1
hsa-miR-708-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586172
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-179
0.026
0
MROH7-TTC4
hsa-miR-708-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037641.1
Biotype: sense
Gene id: NR_037641.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2652-2669
0.008
7
6mer
910-929
0.004
3
6mer
4903-4926
0.003
7
7mer
2865-2885
0.003
10
7mer
3288-3308
0.002
8
6mer
205-226
0.002
Not Conserved
6mer
3235-3251
0.001
3
6mer
3625-3646
0.001
2
6mer
2928-2939
0.001
7
6mer
2782-2798
0.001
5
6mer
2984-3000
0.000
2
XLOC_002275
hsa-miR-708-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004392
Biotype: transcript isomorph
Gene id: XLOC_002275
Gene Name: XLOC_002275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1412-1431
0.013
1
6mer
1087-1109
0.006
3
6mer
194-198
0.004
0
6mer
180-200
0.003
Not Conserved
FAM230B
hsa-miR-708-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000440315
Biotype: processed_transcript
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1430-1447
0.026
1
SNORA67
hsa-miR-708-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581621
Biotype: processed_transcript
Gene id: ENSG00000264772
Gene Name: SNORA67
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1504-1525
0.019
0
8mer
1986-2001
0.005
1
6mer
2788-2813
0.002
3
XLOC_010290
hsa-miR-708-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
308-332
0.014
0
6mer
758-777
0.012
0
AC093627.7
hsa-miR-708-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-609
0.018
1
6mer
434-455
0.007
0
RP11-379P15.1
hsa-miR-708-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
623-638
0.010
1
7mer
3395-3416
0.010
0
6mer
3147-3167
0.003
1
6mer
642-660
0.002
1
6mer
824-844
0.001
Not Conserved
RP11-480C16.1
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608834
Biotype: lincRNA
Gene id: ENSG00000272563
Gene Name: RP11-480C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
820-839
0.011
0
6mer
3397-3412
0.007
1
6mer
409-434
0.004
0
6mer
3270-3292
0.004
1
RP5-997D24.3
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426901
Biotype: antisense
Gene id: ENSG00000225632
Gene Name: RP5-997D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-909
0.022
3
6mer
1024-1035
0.004
1
AC006003.3
hsa-miR-708-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448541
Biotype: sense_intronic
Gene id: ENSG00000231515
Gene Name: AC006003.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-49
0.026
2
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