LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LINC00879
hsa-miR-708-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463200
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
916-928
0.026
0
COLCA1
hsa-miR-708-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5396-5409
0.005
5
6mer
4714-4736
0.003
3
6mer
5383-5402
0.003
1
6mer
3283-3299
0.003
3
6mer
797-822
0.002
0
6mer
5067-5087
0.002
5
6mer
4155-4165
0.002
2
6mer
2539-2564
0.002
2
6mer
3076-3101
0.001
2
8mer
2864-2889
0.001
1
6mer
2989-3014
0.001
2
6mer
3062-3078
0.001
Not Conserved
LINC01484
hsa-miR-708-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521128
Biotype: lincRNA
Gene id: ENSG00000253686
Gene Name: LINC01484
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1397-1418
0.023
0
6mer
356-370
0.003
Not Conserved
AC097713.4
hsa-miR-708-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439798
Biotype: lincRNA
Gene id: ENSG00000231682
Gene Name: AC097713.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-46
0.026
0
RP11-989E6.3
hsa-miR-708-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566260
Biotype: lincRNA
Gene id: ENSG00000214614
Gene Name: RP11-989E6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1437-1443
0.020
Not Conserved
7mer
81-96
0.004
Not Conserved
6mer
824-828
0.002
Not Conserved
AC013733.3
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440371
Biotype: antisense
Gene id: ENSG00000234595
Gene Name: AC013733.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
574-597
0.006
1
6mer
476-490
0.006
1
6mer
567-580
0.005
1
6mer
484-510
0.005
1
6mer
525-547
0.004
1
RP11-350N15.6
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606593
Biotype: antisense
Gene id: ENSG00000272159
Gene Name: RP11-350N15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-240
0.020
7
6mer
638-661
0.006
1
RP11-613D13.4
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526408
Biotype: sense_overlapping
Gene id: ENSG00000254409
Gene Name: RP11-613D13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
331-353
0.026
0
RP11-73B2.4
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450077
Biotype: lincRNA
Gene id: ENSG00000232817
Gene Name: RP11-73B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
458-474
0.026
1
RP11-319E16.1
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536518
Biotype: lincRNA
Gene id: ENSG00000256115
Gene Name: RP11-319E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.020
1
6mer
271-288
0.006
4
RP1-224A6.9
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606754
Biotype: lincRNA
Gene id: ENSG00000271840
Gene Name: RP1-224A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-325
0.013
0
6mer
546-560
0.008
1
6mer
224-249
0.005
2
CTC-332L22.1
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606424
Biotype: lincRNA
Gene id: ENSG00000271849
Gene Name: CTC-332L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-394
0.026
4
AC019117.1
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419463
Biotype: lincRNA
Gene id: ENSG00000236318
Gene Name: AC019117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-193
0.026
1
AC099684.1
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425277
Biotype: antisense
Gene id: ENSG00000228133
Gene Name: AC099684.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1116-1135
0.013
0
6mer
444-457
0.010
7
6mer
1505-1531
0.003
0
LINC00421
hsa-miR-708-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
308-332
0.014
0
6mer
758-777
0.012
0
CASC2
hsa-miR-708-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026941.1
Biotype: lincRNA
Gene id: NR_026941.1 (gene)
Gene Name: CASC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2339-2358
0.010
5
6mer
39-54
0.009
7
6mer
2048-2074
0.007
3
XLOC_007098
hsa-miR-708-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014518
Biotype: transcript isomorph
Gene id: XLOC_007098
Gene Name: XLOC_007098
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2578-2601
0.014
0
7mer
1674-1696
0.007
2
6mer
762-780
0.005
2
CASC18
hsa-miR-708-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_110110.1
Biotype: lincRNA
Gene id: NR_110110.1 (gene)
Gene Name: CASC18
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2326-2340
0.021
0
7mer
2150-2166
0.005
0
LINC00473
hsa-miR-708-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000584911
Biotype: lincRNA
Gene id: ENSG00000223414
Gene Name: LINC00473
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-252
0.021
1
6mer
311-337
0.005
1
RP5-947P14.1
hsa-miR-708-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429608
Biotype: lincRNA
Gene id: ENSG00000237480
Gene Name: RP5-947P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-230
0.026
0
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