LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010996
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023093
Biotype: transcript isomorph
Gene id: XLOC_010996
Gene Name: XLOC_010996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3727-3749
0.021
2
6mer
1340-1359
0.002
0
6mer
2751-2767
0.002
1
8mer
4477-4486
0.001
Not Conserved
6mer
4416-4430
0.001
1
RP11-789C2.1
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000420721
Biotype: lincRNA
Gene id: ENSG00000251598
Gene Name: RP11-789C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-73
0.026
1
LINC01011
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445000
Biotype: lincRNA
Gene id: ENSG00000244041
Gene Name: LINC01011
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2717-2732
0.018
0
8mer+mismatch
2124-2142
0.003
1
6mer
2349-2373
0.002
0
6mer
460-485
0.002
0
RP11-328C8.4
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547824
Biotype: antisense
Gene id: ENSG00000257225
Gene Name: RP11-328C8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2409-2430
0.026
1
XLOC_011509
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023704
Biotype: transcript isomorph
Gene id: XLOC_011509
Gene Name: XLOC_011509
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-454
0.011
1
7mer
290-309
0.010
1
7mer
402-422
0.005
2
AC009299.2
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445372
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-180
0.026
2
XLOC_005063
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011076
Biotype: transcript isomorph
Gene id: XLOC_005063
Gene Name: XLOC_005063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-456
0.012
1
6mer
455-474
0.009
4
6mer
239-254
0.005
1
GS1-124K5.11
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5974-5989
0.006
1
6mer
6901-6914
0.003
Not Conserved
7mer
3203-3225
0.003
0
7mer
3915-3934
0.003
0
6mer
2671-2694
0.002
0
6mer
4549-4566
0.002
1
6mer
3622-3648
0.001
0
6mer
4162-4186
0.001
0
6mer
5381-5399
0.001
0
6mer
3177-3187
0.001
0
6mer
3537-3563
0.001
0
6mer
3545-3564
0.001
0
CTD-2196P11.2
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511734
Biotype: lincRNA
Gene id: ENSG00000251189
Gene Name: CTD-2196P11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-170
0.026
1
XLOC_011482
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023278
Biotype: transcript isomorph
Gene id: XLOC_011482
Gene Name: XLOC_011482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5694-5712
0.014
1
6mer
167-176
0.007
2
6mer
877-890
0.004
2
6mer
2009-2028
0.001
0
XLOC_009544
hsa-miR-708-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019750
Biotype: transcript isomorph
Gene id: XLOC_009544
Gene Name: XLOC_009544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-661
0.018
2
6mer
653-657
0.006
3
6mer
2448-2474
0.002
1
RP4-635E18.6
hsa-miR-708-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447600
Biotype: antisense
Gene id: ENSG00000230337
Gene Name: RP4-635E18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-245
0.026
1
HAND2-AS1
hsa-miR-708-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515310
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-143
0.026
9
LINC00649
hsa-miR-708-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000381181
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1156-1180
0.019
0
6mer
351-374
0.003
1
6mer
1392-1405
0.002
2
7mer
738-757
0.001
0
XLOC_010191
hsa-miR-708-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020911
Biotype: transcript isomorph
Gene id: XLOC_010191
Gene Name: XLOC_010191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-258
0.014
0
6mer
116-137
0.012
0
XXyac-YX60D10.1
hsa-miR-708-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000437012
Biotype: antisense
Gene id: ENSG00000230908
Gene Name: XXyac-YX60D10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-115
0.026
0
LOC102659288
hsa-miR-708-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-143
0.026
1
XLOC_008428
hsa-miR-708-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018149
Biotype: transcript isomorph
Gene id: XLOC_008428
Gene Name: XLOC_008428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.020
1
6mer
600-616
0.006
4
XLOC_008522
hsa-miR-708-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018246
Biotype: transcript isomorph
Gene id: XLOC_008522
Gene Name: XLOC_008522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
932-959
0.007
1
6mer
261-275
0.004
2
6mer
2966-2979
0.003
2
6mer
854-880
0.003
1
6mer
2607-2629
0.003
6
6mer
2976-2999
0.002
1
6mer
3003-3018
0.002
2
6mer
1693-1710
0.002
1
6mer
2985-3012
0.001
1
AC025918.2
hsa-miR-708-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000452467
Biotype: antisense
Gene id: ENSG00000225798
Gene Name: AC025918.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-201
0.026
Not Conserved
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