LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LINC00899
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609737
Biotype: retained_intron
Gene id: ENSG00000231711
Gene Name: LINC00899
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3122-3144
0.020
1
7mer
3994-4011
0.004
1
6mer
3541-3564
0.003
1
TTTY4B
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
469-485
0.027
0
TTTY4C
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-878
0.027
0
NAV2-AS5
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2855-2873
0.015
0
6mer
2680-2702
0.004
1
6mer
2330-2353
0.004
2
6mer
2823-2827
0.004
1
XLOC_011068
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022787
Biotype: transcript isomorph
Gene id: XLOC_011068
Gene Name: XLOC_011068
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
315-334
0.011
0
7mer
598-617
0.006
0
7mer
815-832
0.004
0
6mer
35-61
0.003
0
6mer
138-159
0.003
1
FLJ23867
hsa-miR-708-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026900.1
Biotype: sense
Gene id: NR_026900.1 (gene)
Gene Name: FLJ23867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-328
0.006
1
6mer
2510-2530
0.005
1
7mer
130-147
0.005
1
7mer
246-267
0.004
1
7mer
1360-1380
0.003
2
7mer
889-911
0.002
0
6mer
646-664
0.001
1
RP11-1217F2.15
hsa-miR-708-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442649
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-46
0.027
1
AC009120.4
hsa-miR-708-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568137
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-398
0.020
2
6mer
37-51
0.004
1
6mer
569-592
0.002
1
GNAS-AS1
hsa-miR-708-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443966
Biotype: antisense
Gene id: ENSG00000235590
Gene Name: GNAS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53-62
0.006
5
6mer
957-973
0.005
3
7mer
948-973
0.004
0
7mer
901-915
0.004
1
6mer
874-898
0.004
4
6mer
187-202
0.003
1
LINC00964
hsa-miR-708-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3318-3342
0.016
1
7mer
1367-1389
0.007
3
7mer
1569-1587
0.002
5
6mer
1557-1580
0.001
1
LINC00964
hsa-miR-708-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3271-3295
0.016
1
7mer
1320-1342
0.007
3
7mer
1522-1540
0.002
5
6mer
1510-1533
0.001
1
RP5-940J5.6
hsa-miR-708-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-926
0.018
5
7mer
996-1010
0.005
1
6mer
277-284
0.004
2
DARS-AS1
hsa-miR-708-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593405
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-206
0.010
3
6mer
472-496
0.007
3
6mer
574-593
0.005
4
6mer
413-424
0.005
3
AC093642.3
hsa-miR-708-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429456
Biotype: lincRNA
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1845-1862
0.010
0
6mer
115-126
0.007
0
6mer
1381-1407
0.005
0
6mer
899-922
0.003
0
6mer
902-926
0.002
0
RP11-1114I9.1
hsa-miR-708-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519983
Biotype: lincRNA
Gene id: ENSG00000253659
Gene Name: RP11-1114I9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
345-357
0.023
3
6mer
79-98
0.004
1
AC011738.4
hsa-miR-708-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436105
Biotype: antisense
Gene id: ENSG00000231638
Gene Name: AC011738.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-314
0.024
12
7mer
1078-1090
0.003
4
RP5-1028L10.1
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430098
Biotype: antisense
Gene id: ENSG00000227091
Gene Name: RP5-1028L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.013
5
7mer
387-412
0.013
7
LINC00265
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340510
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2378-2393
0.007
0
7mer
2894-2913
0.005
0
7mer
2735-2749
0.003
0
6mer
64-77
0.003
1
7mer
2156-2178
0.002
1
7mer
1877-1895
0.002
1
6mer
1681-1704
0.002
0
6mer
2785-2801
0.001
0
7mer
2030-2052
0.001
0
XLOC_013743
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1957-1983
0.010
7
6mer
1963-1990
0.006
2
6mer
270-289
0.005
5
6mer
430-453
0.005
2
XLOC_004192
hsa-miR-708-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-603
0.016
2
6mer
735-754
0.005
3
6mer
467-489
0.003
1
6mer
3515-3539
0.002
0
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