LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LINC00664
hsa-miR-708-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2436-2456
0.013
1
6mer
2142-2165
0.004
0
6mer
2002-2029
0.003
1
6mer
2354-2381
0.003
0
6mer
1847-1874
0.002
0
6mer
1195-1218
0.002
Not Conserved
XLOC_005542
hsa-miR-708-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012018
Biotype: transcript isomorph
Gene id: XLOC_005542
Gene Name: XLOC_005542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-467
0.027
0
C1orf132
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
14934-14949
0.005
1
6mer
5874-5894
0.003
2
6mer
864-880
0.002
2
6mer
14366-14387
0.002
1
6mer
14264-14285
0.002
1
6mer
3475-3500
0.002
2
6mer
11852-11876
0.002
1
6mer
4914-4935
0.002
2
6mer
10374-10391
0.002
0
6mer
12822-12845
0.001
1
6mer
1891-1895
0.001
0
6mer
6283-6305
0.001
1
6mer
2243-2257
0.001
1
6mer
5302-5328
0.001
1
6mer
6262-6282
0.001
1
6mer
6252-6268
0.000
0
RP11-93G5.1
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
761-772
0.014
1
7mer
183-201
0.007
1
6mer
168-193
0.004
1
6mer
435-455
0.002
Not Conserved
PROX1-AS1
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607258
Biotype: antisense
Gene id: ENSG00000272167
Gene Name: PROX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-466
0.023
Not Conserved
6mer
48-68
0.004
2
CTD-2008L17.2
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589754
Biotype: lincRNA
Gene id: ENSG00000206129
Gene Name: CTD-2008L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-510
0.027
2
C21orf90
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330490
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-416
0.016
1
6mer
588-606
0.011
1
RP11-503N18.1
hsa-miR-708-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382849
Biotype: lincRNA
Gene id: ENSG00000206113
Gene Name: RP11-503N18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2130-2152
0.005
0
6mer
630-656
0.004
2
7mer
2346-2360
0.004
1
7mer
1850-1861
0.004
1
7mer
707-723
0.003
1
6mer
278-297
0.002
1
6mer
2346-2366
0.002
1
6mer
2231-2250
0.002
0
6mer
2387-2410
0.002
0
CTD-3195I5.1
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571336
Biotype: lincRNA
Gene id: ENSG00000262758
Gene Name: CTD-3195I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-898
0.025
1
8mer+mismatch
1117-1136
0.003
2
SGMS1-AS1
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-585
0.017
1
7mer
8308-8322
0.004
1
6mer
5404-5419
0.002
2
6mer
11522-11549
0.002
0
6mer
1305-1332
0.002
0
6mer
2152-2168
0.001
0
AC005537.2
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609382
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-207
0.025
1
6mer
363-380
0.002
Not Conserved
XLOC_000508
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001231
Biotype: transcript isomorph
Gene id: XLOC_000508
Gene Name: XLOC_000508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1372-1381
0.027
1
LINC01031
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420807
Biotype: lincRNA
Gene id: ENSG00000232077
Gene Name: LINC01031
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
636-645
0.027
1
RP11-58A18.2
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621177
Biotype: lincRNA
Gene id: ENSG00000274478
Gene Name: RP11-58A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-86
0.022
1
6mer
100-112
0.005
0
CTB-129P6.4
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585408
Biotype: antisense
Gene id: ENSG00000267282
Gene Name: CTB-129P6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-154
0.018
1
7mer
302-321
0.009
7
SYNE1-AS1
hsa-miR-708-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412161
Biotype: antisense
Gene id: ENSG00000234577
Gene Name: SYNE1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-352
0.027
9
RP11-627G18.4
hsa-miR-708-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578741
Biotype: lincRNA
Gene id: ENSG00000264825
Gene Name: RP11-627G18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-38
0.027
1
RP13-870H17.3
hsa-miR-708-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000617529
Biotype: lincRNA
Gene id: ENSG00000254872
Gene Name: RP13-870H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-660
0.007
1
8mer
2625-2642
0.006
0
7mer
2811-2826
0.006
0
7mer
2059-2083
0.005
1
6mer
674-695
0.003
1
XLOC_011736
hsa-miR-708-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024857
Biotype: transcript isomorph
Gene id: XLOC_011736
Gene Name: XLOC_011736
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
604-626
0.009
7
7mer
542-562
0.005
2
6mer
258-270
0.004
5
6mer
371-391
0.003
1
6mer
522-544
0.003
2
6mer
163-180
0.003
0
MCM3AP-AS1
hsa-miR-708-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000591223
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-93
0.012
1
7mer
62-79
0.012
4
6mer
124-149
0.003
1
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