LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001117
hsa-miR-708-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001741
Biotype: transcript isomorph
Gene id: XLOC_001117
Gene Name: XLOC_001117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-39
0.028
3
GS1-72M22.1
hsa-miR-708-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607058
Biotype: antisense
Gene id: ENSG00000272163
Gene Name: GS1-72M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1934-1955
0.011
11
7mer
2186-2206
0.010
9
6mer
313-339
0.004
1
6mer
1090-1116
0.002
1
6mer
988-1004
0.001
Not Conserved
RP11-90B9.3
hsa-miR-708-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616598
Biotype: antisense
Gene id: ENSG00000273747
Gene Name: RP11-90B9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-346
0.028
3
AC010971.1
hsa-miR-708-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440455
Biotype: lincRNA
Gene id: ENSG00000234686
Gene Name: AC010971.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-646
0.028
0
TSIX
hsa-miR-708-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
31353-31376
0.004
4
6mer
36374-36396
0.004
1
7mer
33151-33169
0.003
0
8mer+wobble
24458-24482
0.003
0
6mer
6017-6036
0.003
2
6mer
4116-4140
0.002
0
6mer
34125-34144
0.002
5
6mer
3668-3690
0.002
0
6mer
26780-26794
0.002
1
6mer
25837-25855
0.001
0
6mer
6152-6176
0.001
1
6mer
21617-21636
0.001
0
RP11-168L22.2
hsa-miR-708-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451438
Biotype: lincRNA
Gene id: ENSG00000224265
Gene Name: RP11-168L22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-278
0.028
1
RP11-575L7.4
hsa-miR-708-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421734
Biotype: antisense
Gene id: ENSG00000231616
Gene Name: RP11-575L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-317
0.015
4
8mer
764-779
0.013
2
XLOC_005077
hsa-miR-708-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1495-1514
0.014
Not Conserved
7mer
363-389
0.009
0
6mer
386-408
0.004
1
6mer
3908-3927
0.001
1
XLOC_002997
hsa-miR-708-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006381
Biotype: transcript isomorph
Gene id: XLOC_002997
Gene Name: XLOC_002997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-321
0.005
Not Conserved
7mer
507-528
0.002
0
6mer
1840-1863
0.002
1
6mer
1795-1818
0.002
1
6mer
1705-1728
0.002
Not Conserved
6mer
1539-1562
0.002
1
6mer
1584-1607
0.001
0
6mer
1629-1652
0.001
0
6mer
1494-1517
0.001
1
6mer
1750-1773
0.001
Not Conserved
6mer
1224-1247
0.001
1
6mer
1401-1427
0.001
0
6mer
1449-1472
0.001
Not Conserved
6mer
1314-1337
0.001
0
6mer
1111-1131
0.001
0
6mer
1359-1382
0.001
0
6mer
1269-1292
0.001
Not Conserved
6mer
1153-1176
0.001
0
RP11-416I2.1
hsa-miR-708-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562897
Biotype: lincRNA
Gene id: ENSG00000260328
Gene Name: RP11-416I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1057-1082
0.009
1
7mer
2209-2229
0.006
1
7mer
2509-2524
0.005
1
6mer
2994-3011
0.004
0
7mer
2135-2151
0.003
Not Conserved
6mer
1438-1461
0.001
1
MCM3AP-AS1
hsa-miR-708-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455567
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-74
0.012
1
7mer
43-60
0.012
4
6mer
105-130
0.003
1
RP1-151F17.2
hsa-miR-708-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-252
0.016
0
7mer
803-818
0.010
0
6mer
928-954
0.002
0
RP11-143E21.3
hsa-miR-708-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611525
Biotype: lincRNA
Gene id: ENSG00000276122
Gene Name: RP11-143E21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
453-477
0.016
0
7mer
1393-1409
0.006
0
6mer
380-400
0.004
1
6mer
795-821
0.001
0
MCM3AP-AS1
hsa-miR-708-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-74
0.012
1
7mer
43-60
0.012
4
6mer
105-130
0.003
1
RP11-500M8.4
hsa-miR-708-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544380
Biotype: sense_intronic
Gene id: ENSG00000256381
Gene Name: RP11-500M8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-161
0.028
1
PROX1-AS1
hsa-miR-708-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610094
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-196
0.028
7
XLOC_013863
hsa-miR-708-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029195
Biotype: transcript isomorph
Gene id: XLOC_013863
Gene Name: XLOC_013863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-158
0.006
1
7mer
846-870
0.006
1
6mer
332-351
0.003
0
6mer
1204-1225
0.001
0
6mer
1917-1932
0.001
1
7mer
1760-1775
0.001
Not Conserved
6mer
1470-1487
0.001
1
6mer
1349-1364
0.000
1
6mer
1427-1442
0.000
1
6mer
1721-1732
0.000
2
7mer
1605-1624
0.000
0
6mer
1319-1333
0.000
0
6mer
1396-1410
0.000
0
6mer
1551-1565
0.000
1
6mer
1523-1534
0.000
1
6mer
1628-1639
0.000
2
6mer
1690-1701
0.000
1
6mer
1538-1550
0.000
1
6mer
1246-1271
0.000
0
6mer
1702-1716
0.000
1
6mer
1818-1832
0.000
1
6mer
1570-1592
0.000
1
6mer
1507-1518
0.000
0
6mer
1833-1847
0.000
0
6mer
1458-1472
0.000
Not Conserved
6mer
1570-1581
0.000
0
6mer
1640-1654
0.000
0
6mer
1287-1302
0.000
Not Conserved
6mer
1458-1476
0.000
Not Conserved
6mer
1779-1790
0.000
Not Conserved
6mer
1721-1743
0.000
0
6mer
1779-1801
0.000
0
6mer
1806-1817
0.000
Not Conserved
XLOC_003045
hsa-miR-708-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005392
Biotype: transcript isomorph
Gene id: XLOC_003045
Gene Name: XLOC_003045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-339
0.026
1
6mer
1498-1515
0.002
2
RP11-789C17.3
hsa-miR-708-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580491
Biotype: antisense
Gene id: ENSG00000266149
Gene Name: RP11-789C17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-145
0.028
1
AC090505.6
hsa-miR-708-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423318
Biotype: lincRNA
Gene id: ENSG00000237222
Gene Name: AC090505.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-141
0.024
1
6mer
3356-3365
0.003
0
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