LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-856M7.4
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579413
Biotype: lincRNA
Gene id: ENSG00000264072
Gene Name: RP11-856M7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-101
0.016
0
6mer
305-324
0.007
0
6mer
216-242
0.006
0
XLOC_010155
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020873
Biotype: transcript isomorph
Gene id: XLOC_010155
Gene Name: XLOC_010155
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-54
0.029
2
AP001610.5
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411427
Biotype: antisense
Gene id: ENSG00000228318
Gene Name: AP001610.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-591
0.019
4
9mer
87-112
0.009
1
RP1-69M21.2
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453135
Biotype: lincRNA
Gene id: ENSG00000235643
Gene Name: RP1-69M21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1006-1026
0.018
0
7mer
1184-1208
0.011
0
RP5-1125A11.6
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615120
Biotype: lincRNA
Gene id: ENSG00000275784
Gene Name: RP5-1125A11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-222
0.029
2
ASH1L-AS1
hsa-miR-708-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027023.1
Biotype: antisense
Gene id: NR_027023.1 (gene)
Gene Name: ASH1L-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1823-1837
0.018
3
7mer
479-500
0.005
3
6mer
535-560
0.002
Not Conserved
6mer
1088-1105
0.001
0
6mer
532-553
0.001
Not Conserved
6mer
1120-1140
0.001
1
RP11-551L14.4
hsa-miR-708-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000418254
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-476
0.029
0
PROX1-AS1
hsa-miR-708-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000601744
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-678
0.028
7
RP4-647J21.1
hsa-miR-708-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000568457
Biotype: sense_overlapping
Gene id: ENSG00000260997
Gene Name: RP4-647J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1817-1841
0.020
0
6mer
1543-1568
0.004
2
6mer
1765-1783
0.004
1
COL18A1-AS2
hsa-miR-708-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000446475
Biotype: antisense
Gene id: ENSG00000224574
Gene Name: COL18A1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-521
0.028
2
XLOC_013955
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029036
Biotype: transcript isomorph
Gene id: XLOC_013955
Gene Name: XLOC_013955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
922-948
0.010
2
6mer
256-273
0.006
Not Conserved
6mer
858-880
0.004
1
6mer
366-393
0.004
0
6mer
535-545
0.004
0
TMEM147-AS1
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588286
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-245
0.016
1
7mer
306-326
0.005
1
8mer
3436-3456
0.004
1
6mer
1719-1741
0.002
1
6mer
2276-2288
0.001
2
XLOC_010261
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020997
Biotype: transcript isomorph
Gene id: XLOC_010261
Gene Name: XLOC_010261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-175
0.015
1
6mer
395-414
0.013
2
XLOC_007089
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-445
0.006
Not Conserved
7mer
7500-7520
0.005
0
6mer
10485-10509
0.003
0
6mer
4776-4798
0.003
0
8mer
8409-8429
0.002
Not Conserved
6mer
400-423
0.002
Not Conserved
6mer
4213-4227
0.002
0
6mer
6963-6983
0.002
0
7mer
6877-6888
0.002
0
6mer
3791-3809
0.001
Not Conserved
6mer
6203-6213
0.001
Not Conserved
RP11-1096D5.1
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_103449.1
Biotype: lincRNA
Gene id: NR_103449.1 (gene)
Gene Name: RP11-1096D5.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-337
0.019
1
7mer
2766-2784
0.005
0
6mer
341-360
0.003
2
6mer
513-527
0.002
0
XLOC_008618
hsa-miR-708-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017678
Biotype: transcript isomorph
Gene id: XLOC_008618
Gene Name: XLOC_008618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-102
0.010
Not Conserved
7mer
299-316
0.006
2
7mer
1062-1086
0.004
2
6mer
505-531
0.003
1
6mer
934-952
0.002
2
6mer
1987-2003
0.002
1
6mer
2734-2750
0.001
1
FAM224A
hsa-miR-708-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_002161.1
Biotype: lincRNA
Gene id: NR_002161.1 (gene)
Gene Name: FAM224A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-174
0.019
0
6mer
200-226
0.009
0
XLOC_003050
hsa-miR-708-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006443
Biotype: transcript isomorph
Gene id: XLOC_003050
Gene Name: XLOC_003050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
508-533
0.016
1
7mer
327-341
0.012
0
RP11-142C4.6
hsa-miR-708-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532098
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-352
0.014
Not Conserved
8mer
346-367
0.014
0
FLJ39080
hsa-miR-708-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521762
Biotype: lincRNA
Gene id: ENSG00000254349
Gene Name: FLJ39080
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-373
0.028
1
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