LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-66B24.7
hsa-miR-708-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000431060
Biotype: processed_transcript
Gene id: ENSG00000272808
Gene Name: RP11-66B24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4421-4440
0.023
3
7mer
4282-4298
0.004
0
6mer
599-620
0.002
1
RP11-656D10.5
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453437
Biotype: antisense
Gene id: ENSG00000227278
Gene Name: RP11-656D10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-245
0.029
5
XLOC_007324
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
223-247
0.019
1
7mer
1089-1107
0.010
0
XLOC_011537
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023745
Biotype: transcript isomorph
Gene id: XLOC_011537
Gene Name: XLOC_011537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-179
0.022
1
6mer
79-102
0.004
0
6mer
313-334
0.004
0
RP11-551L14.4
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544329
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-497
0.029
0
XLOC_005295
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011120
Biotype: transcript isomorph
Gene id: XLOC_005295
Gene Name: XLOC_005295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1357-1372
0.010
0
6mer
158-179
0.005
1
7mer
2163-2182
0.004
1
6mer
2026-2051
0.002
0
6mer
1746-1767
0.002
0
6mer
1116-1133
0.002
0
6mer
830-846
0.002
2
6mer
1463-1479
0.002
0
6mer
1163-1184
0.001
1
LOC100132354
hsa-miR-708-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024478.1
Biotype: lincRNA
Gene id: NR_024478.1 (gene)
Gene Name: LOC100132354
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1357-1372
0.010
0
6mer
158-179
0.005
1
7mer
2163-2182
0.004
1
6mer
2026-2051
0.002
0
6mer
1746-1767
0.002
0
6mer
1116-1133
0.002
0
6mer
830-846
0.002
2
6mer
1463-1479
0.002
0
6mer
1163-1184
0.001
1
RP11-210M15.2
hsa-miR-708-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559008
Biotype: lincRNA
Gene id: ENSG00000259495
Gene Name: RP11-210M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6359-6377
0.006
6
6mer
6626-6648
0.006
4
6mer
6748-6773
0.006
2
7mer
6216-6234
0.004
1
7mer
1091-1114
0.004
0
6mer
5435-5457
0.002
1
6mer
3625-3644
0.001
0
FAM66C
hsa-miR-708-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000438689
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-285
0.029
0
CTD-2583A14.8
hsa-miR-708-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597780
Biotype: sense_intronic
Gene id: ENSG00000269867
Gene Name: CTD-2583A14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-549
0.014
0
7mer
587-613
0.009
1
6mer
19-41
0.006
0
PROX1-AS1
hsa-miR-708-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451396
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-373
0.029
7
OIP5-AS1
hsa-miR-708-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5610-5633
0.012
4
8mer
6257-6277
0.008
1
7mer
486-504
0.005
1
6mer
3548-3573
0.003
6
XLOC_005514
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
904-914
0.024
2
7mer
250-276
0.004
Not Conserved
XLOC_004366
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9284-9303
0.011
1
7mer
11982-12008
0.009
1
6mer
728-750
0.003
0
7mer
1467-1484
0.002
1
6mer
3440-3458
0.001
1
6mer
7044-7062
0.001
0
6mer
2479-2506
0.001
1
RP11-111E14.1
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558050
Biotype: antisense
Gene id: ENSG00000259351
Gene Name: RP11-111E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
260-283
0.011
12
6mer
996-1000
0.006
0
6mer
813-831
0.005
1
6mer
838-859
0.005
1
6mer
28-50
0.003
0
XLOC_005117
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011630
Biotype: transcript isomorph
Gene id: XLOC_005117
Gene Name: XLOC_005117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
732-751
0.013
1
7mer
570-583
0.008
2
6mer
166-190
0.004
0
6mer
222-243
0.004
1
LINC00879
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466560
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-749
0.029
0
RP11-762H8.1
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560057
Biotype: antisense
Gene id: ENSG00000259322
Gene Name: RP11-762H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-436
0.029
0
CTB-31N19.3
hsa-miR-708-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564271
Biotype: sense_intronic
Gene id: ENSG00000261596
Gene Name: CTB-31N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
234-259
0.029
4
RP11-64C12.4
hsa-miR-708-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592203
Biotype: lincRNA
Gene id: ENSG00000267643
Gene Name: RP11-64C12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-347
0.016
0
6mer
99-118
0.007
0
6mer
181-207
0.006
0
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