LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-85B7.2
hsa-miR-708-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4401-4423
0.021
0
6mer
507-523
0.003
1
6mer
4820-4837
0.002
0
7mer
2595-2613
0.002
0
6mer
2729-2751
0.001
2
6mer
3074-3091
0.001
0
GFOD1-AS1
hsa-miR-708-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446001
Biotype: antisense
Gene id: ENSG00000237786
Gene Name: GFOD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-251
0.021
12
6mer
213-240
0.009
9
RP11-802O23.3
hsa-miR-708-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607214
Biotype: antisense
Gene id: ENSG00000272182
Gene Name: RP11-802O23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-249
0.029
9
RP11-785H20.1
hsa-miR-708-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523550
Biotype: lincRNA
Gene id: ENSG00000254018
Gene Name: RP11-785H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-382
0.029
2
RP11-370B11.3
hsa-miR-708-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448570
Biotype: lincRNA
Gene id: ENSG00000224549
Gene Name: RP11-370B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-144
0.029
1
XLOC_011494
hsa-miR-708-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-50
0.015
1
6mer
742-759
0.014
1
RP11-365O16.6
hsa-miR-708-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420350
Biotype: antisense
Gene id: ENSG00000237101
Gene Name: RP11-365O16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-463
0.014
1
7mer
863-883
0.009
0
6mer
1132-1151
0.004
0
6mer
332-354
0.003
1
AC017002.4
hsa-miR-708-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426124
Biotype: lincRNA
Gene id: ENSG00000225744
Gene Name: AC017002.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
710-737
0.016
2
7mer
160-179
0.013
1
XLOC_000839
hsa-miR-708-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001498
Biotype: transcript isomorph
Gene id: XLOC_000839
Gene Name: XLOC_000839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-292
0.023
0
6mer
149-166
0.006
1
RP11-24C3.2
hsa-miR-708-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438872
Biotype: antisense
Gene id: ENSG00000244380
Gene Name: RP11-24C3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-262
0.016
5
6mer
94-118
0.007
7
6mer
222-248
0.006
4
EMX2OS
hsa-miR-708-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5971-5992
0.009
2
7mer
6661-6683
0.007
2
6mer
356-368
0.005
0
7mer
5088-5109
0.004
4
6mer
6628-6646
0.002
1
6mer
4831-4850
0.001
1
6mer
1044-1067
0.001
Not Conserved
RP5-1028L10.1
hsa-miR-708-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443008
Biotype: antisense
Gene id: ENSG00000227091
Gene Name: RP5-1028L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-70
0.014
5
7mer
282-307
0.009
7
6mer
763-778
0.006
3
CTD-2240J17.3
hsa-miR-708-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612811
Biotype: lincRNA
Gene id: ENSG00000278448
Gene Name: CTD-2240J17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-84
0.029
4
XLOC_003440
hsa-miR-708-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-639
0.005
0
7mer
657-672
0.005
0
7mer
464-486
0.005
0
6mer
2015-2027
0.005
1
6mer
2100-2120
0.004
2
6mer
389-412
0.004
0
6mer
2021-2042
0.001
1
LINC00222
hsa-miR-708-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000416104
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1426
0.022
1
6mer
1287-1304
0.004
4
6mer
523-537
0.003
1
XLOC_000162
hsa-miR-708-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000039
Biotype: transcript isomorph
Gene id: XLOC_000162
Gene Name: XLOC_000162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-740
0.009
0
6mer
263-274
0.006
1
6mer
131-153
0.005
0
6mer
1468-1483
0.005
0
6mer
487-506
0.004
1
AC007743.1
hsa-miR-708-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447423
Biotype: antisense
Gene id: ENSG00000233251
Gene Name: AC007743.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1484-1505
0.013
7
7mer
1460-1482
0.012
9
6mer
1480-1505
0.005
7
RP11-114H20.1
hsa-miR-708-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2264-2290
0.020
2
7mer
793-815
0.008
2
6mer
894-912
0.002
0
RP11-445P17.8
hsa-miR-708-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449457
Biotype: lincRNA
Gene id: ENSG00000224034
Gene Name: RP11-445P17.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-57
0.029
1
AC008079.10
hsa-miR-708-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
20274-20296
0.012
10
6mer
2266-2283
0.002
2
6mer
13507-13531
0.002
9
6mer
3795-3807
0.001
1
6mer
13459-13480
0.001
7
6mer
10362-10380
0.001
0
7mer
7823-7847
0.001
0
6mer
5266-5285
0.001
0
6mer
6097-6122
0.001
2
6mer
8570-8589
0.001
0
6mer
9061-9083
0.001
3
7mer
2805-2831
0.001
0
6mer
8562-8578
0.001
2
6mer
17209-17225
0.001
Not Conserved
6mer
5205-5226
0.000
0
6mer
10322-10334
0.000
0
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