LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
POLR2J4
hsa-miR-708-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427076
Biotype: processed_transcript
Gene id: ENSG00000214783
Gene Name: POLR2J4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-494
0.020
0
7mer
5023-5050
0.002
3
6mer
2077-2096
0.002
5
7mer
3078-3094
0.002
0
6mer
5812-5829
0.002
0
7mer
1467-1489
0.001
0
6mer
2811-2830
0.001
1
6mer
3033-3042
0.000
0
7mer
3007-3023
0.000
0
XLOC_001265
hsa-miR-708-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6864-6881
0.022
0
6mer
6041-6062
0.003
4
6mer
3389-3406
0.002
2
6mer
1926-1946
0.001
Not Conserved
6mer
2748-2768
0.001
0
6mer
3383-3406
0.001
1
6mer
1918-1932
0.001
1
RP11-301G19.1
hsa-miR-708-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1498-1515
0.024
0
6mer
222-231
0.004
Not Conserved
6mer
639-658
0.002
Not Conserved
RP11-180P8.3
hsa-miR-708-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-478
0.021
6
6mer
395-410
0.009
7
XLOC_011780
hsa-miR-708-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024252
Biotype: transcript isomorph
Gene id: XLOC_011780
Gene Name: XLOC_011780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-200
0.026
3
6mer
510-534
0.004
6
AC004158.3
hsa-miR-708-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624327
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-200
0.026
3
6mer
510-534
0.004
6
AP005530.2
hsa-miR-708-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000572608
Biotype: lincRNA
Gene id: ENSG00000263305
Gene Name: AP005530.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-534
0.030
0
RP11-747H7.3
hsa-miR-708-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6547-6568
0.018
1
6mer
5771-5795
0.005
5
6mer
947-951
0.003
1
6mer
2331-2347
0.002
1
6mer
1745-1756
0.002
1
RP11-331F9.3
hsa-miR-708-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457044
Biotype: antisense
Gene id: ENSG00000231393
Gene Name: RP11-331F9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-416
0.018
1
7mer
235-255
0.008
1
6mer
428-451
0.004
1
XLOC_010453
hsa-miR-708-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021859
Biotype: transcript isomorph
Gene id: XLOC_010453
Gene Name: XLOC_010453
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1040-1057
0.030
0
RP11-126K1.6
hsa-miR-708-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455503
Biotype: antisense
Gene id: ENSG00000237976
Gene Name: RP11-126K1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-324
0.030
1
XLOC_010288
hsa-miR-708-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
866-890
0.007
1
6mer
638-660
0.006
1
6mer
2068-2088
0.005
0
6mer
421-432
0.005
0
6mer
504-519
0.004
1
6mer
1391-1403
0.002
0
RP11-259K5.2
hsa-miR-708-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604992
Biotype: antisense
Gene id: ENSG00000270194
Gene Name: RP11-259K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-216
0.015
1
6mer
1795-1817
0.007
9
8mer
1975-1986
0.005
1
6mer
1631-1652
0.003
3
RP11-631M21.1
hsa-miR-708-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562162
Biotype: lincRNA
Gene id: ENSG00000260370
Gene Name: RP11-631M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-314
0.030
0
SNCA-AS1
hsa-miR-708-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513653
Biotype: antisense
Gene id: ENSG00000247775
Gene Name: SNCA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-378
0.030
6
XLOC_006324
hsa-miR-708-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-91
0.030
0
RP1-140K8.5
hsa-miR-708-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566733
Biotype: lincRNA
Gene id: ENSG00000260604
Gene Name: RP1-140K8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1078-1101
0.019
1
6mer
677-688
0.003
3
7mer
6450-6474
0.003
0
6mer
4374-4397
0.002
1
7mer
4766-4792
0.002
1
6mer
1029-1045
0.001
Not Conserved
XLOC_000291
hsa-miR-708-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001024
Biotype: transcript isomorph
Gene id: XLOC_000291
Gene Name: XLOC_000291
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-346
0.024
1
6mer
480-499
0.006
2
AC007743.1
hsa-miR-708-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596663
Biotype: antisense
Gene id: ENSG00000233251
Gene Name: AC007743.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2941-2962
0.013
7
7mer
2917-2939
0.011
9
6mer
2937-2962
0.005
7
CTC-340A15.2
hsa-miR-708-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519267
Biotype: antisense
Gene id: ENSG00000241956
Gene Name: CTC-340A15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-176
0.030
2
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