LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-126K1.9
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609583
Biotype: lincRNA
Gene id: ENSG00000273481
Gene Name: RP11-126K1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
197-217
0.031
0
XLOC_009208
hsa-miR-708-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019385
Biotype: transcript isomorph
Gene id: XLOC_009208
Gene Name: XLOC_009208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-396
0.013
2
6mer
1288-1307
0.007
1
7mer
707-731
0.005
1
6mer
292-317
0.004
1
6mer
243-259
0.003
1
RP11-1096D5.1
hsa-miR-708-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567801
Biotype: lincRNA
Gene id: ENSG00000260440
Gene Name: RP11-1096D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-337
0.019
1
6mer
5025-5050
0.005
1
6mer
341-360
0.003
2
7mer
2766-2784
0.002
0
6mer
513-527
0.002
0
XLOC_002995
hsa-miR-708-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006375
Biotype: transcript isomorph
Gene id: XLOC_002995
Gene Name: XLOC_002995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1090-1115
0.018
1
6mer
299-315
0.013
1
AC004448.5
hsa-miR-708-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
783-804
0.031
1
XLOC_013007
hsa-miR-708-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026949
Biotype: transcript isomorph
Gene id: XLOC_013007
Gene Name: XLOC_013007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-125
0.031
0
AC073635.5
hsa-miR-708-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476561
Biotype: antisense
Gene id: ENSG00000250990
Gene Name: AC073635.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
111-130
0.023
1
6mer
461-476
0.008
3
AC024560.2
hsa-miR-708-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1219-1242
0.019
0
6mer
361-383
0.012
0
RP11-661G16.1
hsa-miR-708-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554967
Biotype: antisense
Gene id: ENSG00000258437
Gene Name: RP11-661G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-33
0.023
1
6mer
313-334
0.007
1
LINC00174
hsa-miR-708-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3452-3470
0.005
Not Conserved
8mer
1888-1911
0.004
0
8mer
2434-2449
0.003
1
7mer
3161-3181
0.002
0
7mer
2497-2514
0.002
1
7mer
3391-3407
0.002
1
7mer
2733-2752
0.001
0
7mer
966-991
0.001
Not Conserved
6mer
743-761
0.001
Not Conserved
6mer
2182-2200
0.001
0
6mer
546-572
0.001
Not Conserved
7mer
3099-3120
0.001
0
7mer
1297-1323
0.001
0
6mer
1387-1405
0.001
0
7mer
3037-3063
0.001
0
7mer
1265-1283
0.001
0
7mer
3018-3031
0.001
0
6mer
1165-1191
0.001
0
7mer
1254-1273
0.000
0
LINC01122
hsa-miR-708-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422793
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-233
0.021
6
6mer
635-654
0.010
5
RP11-37B2.1
hsa-miR-708-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519655
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-286
0.012
1
8mer
1236-1263
0.012
0
6mer
11-35
0.004
0
6mer
1105-1121
0.003
0
RP11-44N21.1
hsa-miR-708-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548361
Biotype: lincRNA
Gene id: ENSG00000257556
Gene Name: RP11-44N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-341
0.030
0
AC009120.4
hsa-miR-708-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569389
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-518
0.027
2
6mer
689-712
0.003
1
XLOC_003221
hsa-miR-708-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007239
Biotype: transcript isomorph
Gene id: XLOC_003221
Gene Name: XLOC_003221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-650
0.030
1
TMX2-CTNND1
hsa-miR-708-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
336-355
0.009
9
6mer
356-369
0.005
7
6mer
471-494
0.004
7
6mer
6239-6248
0.004
0
7mer
1547-1573
0.003
5
6mer
4736-4760
0.002
2
6mer
4301-4320
0.002
3
6mer
488-500
0.002
1
RP11-383M4.2
hsa-miR-708-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427387
Biotype: lincRNA
Gene id: ENSG00000230846
Gene Name: RP11-383M4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-409
0.030
1
LINC01105
hsa-miR-708-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444416
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
39-52
0.023
1
6mer
2059-2078
0.005
1
6mer
1079-1102
0.003
1
RP1-29C18.10
hsa-miR-708-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000391625
Biotype: lincRNA
Gene id: ENSG00000212939
Gene Name: RP1-29C18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-618
0.010
1
7mer
30-47
0.010
1
7mer
3311-3328
0.007
1
6mer
3358-3374
0.002
0
6mer
1309-1320
0.001
1
6mer
1726-1748
0.001
Not Conserved
CITF22-24E5.1
hsa-miR-708-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417792
Biotype: antisense
Gene id: ENSG00000234979
Gene Name: CITF22-24E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-199
0.023
5
7mer
234-249
0.007
3
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