LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
AC109333.10
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000438266
Biotype: antisense
Gene id: ENSG00000227495
Gene Name: AC109333.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-535
0.017
4
8mer
122-140
0.009
1
6mer
255-270
0.003
4
6mer
386-406
0.001
0
XLOC_001277
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001893
Biotype: transcript isomorph
Gene id: XLOC_001277
Gene Name: XLOC_001277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-107
0.031
1
LINC01222
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427439
Biotype: lincRNA
Gene id: ENSG00000233410
Gene Name: LINC01222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1695-1710
0.026
1
6mer
236-240
0.005
1
XLOC_001149
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000112
Biotype: transcript isomorph
Gene id: XLOC_001149
Gene Name: XLOC_001149
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1694-1709
0.026
1
6mer
235-239
0.005
1
CTD-2020K17.3
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587534
Biotype: antisense
Gene id: ENSG00000233175
Gene Name: CTD-2020K17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1911-1930
0.012
4
7mer
1761-1778
0.008
6
6mer
1650-1665
0.005
5
6mer
839-854
0.003
1
7mer
1607-1619
0.002
0
6mer
621-645
0.002
2
CERS6-AS1
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594898
Biotype: antisense
Gene id: ENSG00000227617
Gene Name: CERS6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
60-82
0.022
1
6mer
42-58
0.009
0
LINC00971
hsa-miR-708-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2158-2180
0.014
0
8mer
6635-6652
0.012
1
6mer
4276-4296
0.003
7
6mer
3112-3124
0.001
2
6mer
5317-5341
0.001
Not Conserved
RP11-572C15.5
hsa-miR-708-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110017.1
Biotype: sense
Gene id: NR_110017.1 (gene)
Gene Name: RP11-572C15.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
889-913
0.026
2
6mer
1782-1805
0.005
0
LOXL1-AS1
hsa-miR-708-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567257
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
393-413
0.011
1
7mer
1983-2006
0.005
1
6mer
2185-2198
0.004
0
6mer
556-579
0.004
1
6mer
1396-1419
0.003
1
6mer
839-859
0.003
1
6mer
753-757
0.002
Not Conserved
XLOC_006677
hsa-miR-708-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-94
0.006
1
6mer
1491-1514
0.004
1
6mer
1859-1881
0.004
0
6mer
1782-1799
0.003
0
6mer
1331-1354
0.003
2
6mer
1650-1673
0.003
0
6mer
1199-1222
0.002
1
6mer
1436-1452
0.002
0
6mer
1282-1305
0.002
0
6mer
1142-1165
0.001
0
6mer
1093-1116
0.001
0
LINC00907
hsa-miR-708-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589068
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1038-1055
0.020
3
7mer
209-228
0.007
1
6mer
1163-1187
0.003
1
XLOC_013508
hsa-miR-708-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027834
Biotype: transcript isomorph
Gene id: XLOC_013508
Gene Name: XLOC_013508
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-146
0.027
1
7mer
389-409
0.004
Not Conserved
XLOC_010026
hsa-miR-708-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020726
Biotype: transcript isomorph
Gene id: XLOC_010026
Gene Name: XLOC_010026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-605
0.024
1
8mer
323-346
0.007
0
RP4-635E18.6
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435388
Biotype: antisense
Gene id: ENSG00000230337
Gene Name: RP4-635E18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-149
0.031
1
CH17-262A2.1
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000618815
Biotype: sense_intronic
Gene id: ENSG00000275426
Gene Name: CH17-262A2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.031
1
XLOC_002560
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005379
Biotype: transcript isomorph
Gene id: XLOC_002560
Gene Name: XLOC_002560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2415-2439
0.011
1
6mer
2640-2657
0.006
1
6mer
2218-2242
0.004
1
6mer
1955-1959
0.004
0
6mer
718-742
0.003
1
6mer
732-751
0.002
0
RP1-267D11.6
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611079
Biotype: antisense
Gene id: ENSG00000277283
Gene Name: RP1-267D11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
843-861
0.031
1
XLOC_006312
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013655
Biotype: transcript isomorph
Gene id: XLOC_006312
Gene Name: XLOC_006312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-508
0.031
0
RP11-58K22.1
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528183
Biotype: lincRNA
Gene id: ENSG00000255451
Gene Name: RP11-58K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-237
0.031
2
RP4-773N10.4
hsa-miR-708-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000554749
Biotype: antisense
Gene id: ENSG00000258634
Gene Name: RP4-773N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3820-3835
0.008
2
6mer
269-294
0.006
1
6mer
457-480
0.005
3
6mer
3587-3602
0.004
2
6mer
1198-1220
0.002
0
6mer
1570-1592
0.002
Not Conserved
7mer
2402-2428
0.002
2
6mer
593-612
0.002
1
6mer
1880-1899
0.001
1
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