LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-266K4.14
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1120-1139
0.011
1
7mer
1667-1694
0.008
1
7mer
412-434
0.006
0
6mer
3185-3210
0.004
Not Conserved
6mer
2284-2303
0.003
0
RP11-156E6.1
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2668-2688
0.023
1
8mer
1551-1570
0.006
1
6mer
936-962
0.003
1
CTD-2376I4.1
hsa-miR-708-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607027
Biotype: lincRNA
Gene id: ENSG00000271926
Gene Name: CTD-2376I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-157
0.032
Not Conserved
AC092159.3
hsa-miR-708-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439196
Biotype: antisense
Gene id: ENSG00000233970
Gene Name: AC092159.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
537-562
0.021
1
6mer
377-401
0.011
1
RP11-702B10.2
hsa-miR-708-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609911
Biotype: lincRNA
Gene id: ENSG00000273415
Gene Name: RP11-702B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-466
0.017
1
8mer
730-753
0.015
1
CTD-2078B5.2
hsa-miR-708-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604954
Biotype: lincRNA
Gene id: ENSG00000271334
Gene Name: CTD-2078B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-379
0.021
1
7mer
348-363
0.011
1
XLOC_009662
hsa-miR-708-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021064
Biotype: transcript isomorph
Gene id: XLOC_009662
Gene Name: XLOC_009662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
211-228
0.031
1
AC004549.6
hsa-miR-708-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441955
Biotype: antisense
Gene id: ENSG00000229893
Gene Name: AC004549.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
210-225
0.031
1
CXADRP3
hsa-miR-708-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581457
Biotype: lincRNA
Gene id: ENSG00000265766
Gene Name: CXADRP3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
936-960
0.022
2
6mer
616-643
0.004
0
6mer
391-411
0.003
1
6mer
1304-1321
0.001
Not Conserved
6mer
1286-1306
0.001
0
AC010976.2
hsa-miR-708-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599001
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-550
0.031
5
LINC00396
hsa-miR-708-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411690
Biotype: lincRNA
Gene id: ENSG00000231428
Gene Name: LINC00396
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-275
0.031
1
AC010145.4
hsa-miR-708-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422415
Biotype: lincRNA
Gene id: ENSG00000226764
Gene Name: AC010145.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-57
0.017
7
7mer
43-54
0.012
1
6mer
416-443
0.003
0
AC093642.3
hsa-miR-708-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451070
Biotype: retained_intron
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
450-474
0.019
0
6mer
447-470
0.013
0
RP11-229P13.15
hsa-miR-708-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439076
Biotype: antisense
Gene id: ENSG00000236394
Gene Name: RP11-229P13.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-53
0.018
0
7mer
103-127
0.007
0
6mer
103-118
0.004
1
7mer
196-218
0.003
0
RP5-896L10.1
hsa-miR-708-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425113
Biotype: antisense
Gene id: ENSG00000232825
Gene Name: RP5-896L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-874
0.018
1
7mer
2167-2189
0.012
1
6mer
999-1024
0.001
1
AC093590.1
hsa-miR-708-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419243
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-64
0.022
3
7mer
531-554
0.009
1
RP11-572C15.5
hsa-miR-708-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481624
Biotype: lincRNA
Gene id: ENSG00000240893
Gene Name: RP11-572C15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
891-915
0.026
2
6mer
1784-1807
0.005
0
RP11-40A13.1
hsa-miR-708-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584688
Biotype: antisense
Gene id: ENSG00000266535
Gene Name: RP11-40A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-392
0.027
3
6mer
462-478
0.004
0
LINC00442
hsa-miR-708-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
866-890
0.007
1
6mer
1953-1973
0.006
0
6mer
638-660
0.006
1
6mer
421-432
0.005
0
6mer
504-519
0.004
1
6mer
1276-1288
0.003
0
RP11-488I20.3
hsa-miR-708-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_027080.2
Biotype: lincRNA
Gene id: NR_027080.2 (gene)
Gene Name: RP11-488I20.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1274-1285
0.027
0
6mer
469-491
0.004
0
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