LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-268I9.3
hsa-miR-708-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583436
Biotype: lincRNA
Gene id: ENSG00000264149
Gene Name: RP11-268I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-284
0.032
Not Conserved
RP11-168K11.3
hsa-miR-708-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2515-2538
0.010
6
7mer
1655-1666
0.005
1
6mer
291-313
0.004
3
7mer
2055-2071
0.004
2
6mer
743-760
0.003
2
6mer
1326-1339
0.002
2
6mer
869-885
0.001
3
6mer
1798-1822
0.001
1
6mer
787-811
0.001
0
BCYRN1
hsa-miR-708-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6159-6173
0.011
0
7mer
2159-2170
0.007
2
6mer
518-539
0.003
0
6mer
11133-11155
0.003
2
6mer
656-677
0.003
0
6mer
2547-2574
0.002
1
6mer
5629-5647
0.001
4
6mer
5461-5485
0.001
0
6mer
5940-5962
0.001
0
LINC01330
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490897
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-122
0.032
3
RP11-875O11.1
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502083
Biotype: antisense
Gene id: ENSG00000245025
Gene Name: RP11-875O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
196-209
0.015
1
8mer
401-422
0.009
7
6mer
1337-1360
0.004
4
6mer
684-707
0.004
8
LINC00261
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564492
Biotype: lincRNA
Gene id: ENSG00000259974
Gene Name: LINC00261
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4273-4292
0.024
1
7mer
2302-2327
0.002
0
6mer
1620-1630
0.002
6
6mer
3845-3869
0.002
3
6mer
3024-3051
0.002
2
XLOC_010271
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021009
Biotype: transcript isomorph
Gene id: XLOC_010271
Gene Name: XLOC_010271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-44
0.032
0
XLOC_001046
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001691
Biotype: transcript isomorph
Gene id: XLOC_001046
Gene Name: XLOC_001046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
561-583
0.028
1
6mer
819-836
0.004
1
XLOC_002805
hsa-miR-708-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006207
Biotype: transcript isomorph
Gene id: XLOC_002805
Gene Name: XLOC_002805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-399
0.025
2
6mer
678-691
0.006
1
RP4-568C11.4
hsa-miR-708-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-731
0.032
0
XLOC_012007
hsa-miR-708-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024727
Biotype: transcript isomorph
Gene id: XLOC_012007
Gene Name: XLOC_012007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
639-660
0.021
2
6mer
1068-1091
0.005
4
6mer
37-51
0.004
1
6mer
831-854
0.002
1
CTD-3020H12.4
hsa-miR-708-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000605980
Biotype: antisense
Gene id: ENSG00000271717
Gene Name: CTD-3020H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-198
0.027
1
6mer
178-199
0.005
1
RP11-363E7.4
hsa-miR-708-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1355
0.032
3
XLOC_013548
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028197
Biotype: transcript isomorph
Gene id: XLOC_013548
Gene Name: XLOC_013548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-428
0.010
1
7mer
357-375
0.009
1
7mer
571-589
0.006
0
6mer
46-61
0.004
0
6mer
465-480
0.002
Not Conserved
RP11-1101K5.1
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521904
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-77
0.022
1
7mer
212-221
0.007
1
6mer
158-183
0.003
0
XLOC_001726
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1234-1258
0.020
3
8mer
1096-1112
0.006
1
6mer
606-625
0.005
1
XLOC_008033
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-171
0.018
0
6mer
666-682
0.007
1
6mer
3076-3097
0.004
0
6mer
2550-2572
0.002
0
XLOC_012731
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026380
Biotype: transcript isomorph
Gene id: XLOC_012731
Gene Name: XLOC_012731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-195
0.032
0
RP11-473M20.7
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4082-4101
0.011
4
7mer
4226-4252
0.007
1
6mer
4243-4264
0.003
1
6mer
2819-2842
0.003
3
6mer
1181-1203
0.003
2
7mer
4052-4074
0.002
0
6mer
1603-1614
0.001
2
6mer
2666-2687
0.001
2
6mer
2588-2604
0.001
0
NEAT1
hsa-miR-708-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21672-21699
0.006
0
7mer
22486-22507
0.005
0
7mer
825-843
0.004
1
7mer
13453-13470
0.003
1
6mer
9346-9369
0.002
1
6mer
18789-18815
0.002
0
6mer
1488-1505
0.002
3
6mer
11434-11461
0.002
1
6mer
6568-6589
0.001
1
6mer
5191-5207
0.001
1
6mer
7373-7383
0.001
1
6mer
13553-13573
0.001
2
6mer
7404-7424
0.001
3
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