LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LOC441242
hsa-miR-708-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038378.2
Biotype: sense
Gene id: NR_038378.2 (gene)
Gene Name: LOC441242
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1690-1701
0.026
3
7mer
1439-1459
0.005
0
6mer
850-866
0.002
Not Conserved
CTD-2078B5.2
hsa-miR-708-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000603514
Biotype: lincRNA
Gene id: ENSG00000271334
Gene Name: CTD-2078B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-335
0.017
1
7mer
304-319
0.016
1
MIR335
hsa-miR-708-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604666
Biotype: antisense
Gene id: ENSG00000270823
Gene Name: MIR335
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2468-2483
0.026
1
6mer
2106-2121
0.002
1
6mer
1181-1207
0.002
1
6mer
1071-1091
0.002
1
CTD-2162K18.3
hsa-miR-708-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
578-594
0.033
1
RP11-142J21.1
hsa-miR-708-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561174
Biotype: antisense
Gene id: ENSG00000259360
Gene Name: RP11-142J21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-327
0.033
2
RP5-1071N3.1
hsa-miR-708-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449034
Biotype: antisense
Gene id: ENSG00000231105
Gene Name: RP5-1071N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2339-2356
0.009
1
7mer
680-705
0.005
2
6mer
119-146
0.004
1
8mer
1345-1367
0.003
0
6mer
1967-1987
0.003
2
6mer
1663-1683
0.003
1
6mer
1474-1501
0.002
2
6mer
981-993
0.002
0
6mer
1674-1691
0.001
0
CACNA1C-AS1
hsa-miR-708-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541673
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-483
0.011
9
7mer
65-85
0.009
0
7mer
39-64
0.006
1
6mer
15-36
0.004
2
6mer
113-136
0.003
1
RP1-266L20.4
hsa-miR-708-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430250
Biotype: antisense
Gene id: ENSG00000227704
Gene Name: RP1-266L20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-282
0.033
1
CYYR1-AS1
hsa-miR-708-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414486
Biotype: antisense
Gene id: ENSG00000197934
Gene Name: CYYR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-40
0.027
1
6mer
161-181
0.006
2
LOC100128885
hsa-miR-708-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-323
0.015
0
6mer
4050-4073
0.011
0
6mer
41-63
0.007
0
RP11-551L14.4
hsa-miR-708-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613860
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
777-803
0.028
0
6mer
21-33
0.004
1
XLOC_001333
hsa-miR-708-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004690
Biotype: transcript isomorph
Gene id: XLOC_001333
Gene Name: XLOC_001333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-135
0.015
1
7mer
2805-2827
0.007
1
6mer
2306-2328
0.003
2
6mer
816-840
0.003
1
6mer
2136-2156
0.002
1
6mer
915-929
0.001
1
6mer
920-942
0.001
1
LINC00595
hsa-miR-708-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000459633
Biotype: lincRNA
Gene id: ENSG00000227136
Gene Name: LINC00595
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-81
0.024
0
7mer
101-122
0.009
2
XLOC_006954
hsa-miR-708-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014884
Biotype: transcript isomorph
Gene id: XLOC_006954
Gene Name: XLOC_006954
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
431-451
0.017
0
6mer
260-284
0.016
0
CTB-114C7.4
hsa-miR-708-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511921
Biotype: lincRNA
Gene id: ENSG00000250274
Gene Name: CTB-114C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-275
0.016
1
7mer
1957-1973
0.011
1
7mer
976-990
0.006
1
AC073254.1
hsa-miR-708-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617813
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-392
0.032
2
LINC00846
hsa-miR-708-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-581
0.014
Not Conserved
7mer
948-973
0.013
1
6mer
1405-1432
0.006
0
CTD-2636A23.2
hsa-miR-708-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1558-1580
0.032
3
RP1-292B18.4
hsa-miR-708-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415477
Biotype: antisense
Gene id: ENSG00000223598
Gene Name: RP1-292B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
360-377
0.032
2
RP11-284F21.11
hsa-miR-708-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609800
Biotype: lincRNA
Gene id: ENSG00000272971
Gene Name: RP11-284F21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-312
0.032
1
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