LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
AC084219.3
hsa-miR-708-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591772
Biotype: antisense
Gene id: ENSG00000267163
Gene Name: AC084219.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2072-2092
0.011
1
7mer
681-702
0.008
0
6mer
1913-1928
0.007
1
6mer
2052-2073
0.007
1
RP11-164P12.3
hsa-miR-708-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514269
Biotype: antisense
Gene id: ENSG00000251455
Gene Name: RP11-164P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-312
0.029
2
6mer
1037-1059
0.002
3
6mer
1941-1965
0.002
0
RP11-434I12.2
hsa-miR-708-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2489-2509
0.022
4
8mer
3100-3114
0.012
3
CH507-210P18.1
hsa-miR-708-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623678
Biotype: lincRNA
Gene id: ENSG00000279998
Gene Name: CH507-210P18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-674
0.024
2
6mer
964-991
0.003
0
6mer
1197-1216
0.003
1
6mer
306-326
0.003
0
XLOC_000782
hsa-miR-708-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
731-753
0.017
0
6mer
1931-1953
0.012
0
6mer
160-177
0.003
Not Conserved
6mer
1182-1206
0.002
Not Conserved
CASC18
hsa-miR-708-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548557
Biotype: lincRNA
Gene id: ENSG00000257859
Gene Name: CASC18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2297-2311
0.029
0
7mer
2121-2137
0.005
0
RP11-546B15.1
hsa-miR-708-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561800
Biotype: antisense
Gene id: ENSG00000261002
Gene Name: RP11-546B15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-233
0.024
5
6mer
365-374
0.009
7
XLOC_007037
hsa-miR-708-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014958
Biotype: transcript isomorph
Gene id: XLOC_007037
Gene Name: XLOC_007037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-471
0.017
Not Conserved
6mer
27-44
0.009
1
7mer
377-393
0.007
0
RP11-266O8.1
hsa-miR-708-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556519
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1061-1086
0.018
3
6mer
1075-1090
0.007
4
6mer
712-726
0.005
2
6mer
327-349
0.003
0
RP11-571M6.7
hsa-miR-708-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549477
Biotype: antisense
Gene id: ENSG00000257342
Gene Name: RP11-571M6.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
611-634
0.017
1
7mer
132-156
0.014
7
6mer
453-475
0.002
1
CTD-2541J13.2
hsa-miR-708-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-807
0.022
2
7mer
1256-1278
0.007
6
6mer
962-981
0.004
4
LINC00174
hsa-miR-708-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3452-3470
0.005
Not Conserved
8mer
1888-1911
0.004
0
8mer
2434-2449
0.003
1
7mer
3391-3407
0.003
1
7mer
3161-3181
0.003
0
7mer
2497-2514
0.002
1
7mer
2733-2752
0.001
0
7mer
966-991
0.001
Not Conserved
6mer
743-761
0.001
Not Conserved
7mer
3099-3120
0.001
0
6mer
2182-2200
0.001
0
6mer
546-572
0.001
Not Conserved
7mer
1297-1323
0.001
0
6mer
1387-1405
0.001
0
7mer
3037-3063
0.001
0
7mer
1265-1283
0.001
0
7mer
3018-3031
0.001
0
6mer
1165-1191
0.001
0
7mer
1254-1273
0.000
0
RP11-61I13.3
hsa-miR-708-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2905-2929
0.021
8
6mer
446-471
0.007
5
7mer
2671-2693
0.005
3
RP11-1E6.1
hsa-miR-708-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508352
Biotype: retained_intron
Gene id: ENSG00000250657
Gene Name: RP11-1E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-278
0.019
3
7mer
9-32
0.007
1
6mer
311-333
0.007
4
LOC648987
hsa-miR-708-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-234
0.013
0
7mer
1266-1293
0.010
1
6mer
790-813
0.006
1
6mer
644-670
0.004
0
AC142119.1
hsa-miR-708-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428280
Biotype: lincRNA
Gene id: ENSG00000236989
Gene Name: AC142119.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-828
0.024
1
6mer
794-819
0.009
5
XLOC_008910
hsa-miR-708-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00019001
Biotype: transcript isomorph
Gene id: XLOC_008910
Gene Name: XLOC_008910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
559-575
0.033
1
LINC00284
hsa-miR-708-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000439707
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2397-2417
0.010
2
7mer
2411-2434
0.009
1
6mer
224-241
0.005
5
6mer
1719-1741
0.004
2
6mer
551-572
0.003
1
6mer
1392-1413
0.002
0
RP11-363G10.2
hsa-miR-708-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-106
0.024
2
7mer
1555-1577
0.007
1
6mer
1458-1476
0.002
0
XLOC_006122
hsa-miR-708-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
674-697
0.021
1
6mer
631-646
0.012
1
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