LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000529
hsa-miR-708-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001247
Biotype: transcript isomorph
Gene id: XLOC_000529
Gene Name: XLOC_000529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
177-198
0.014
2
8mer
376-389
0.011
2
6mer
971-984
0.005
3
6mer
3812-3828
0.004
1
6mer
2109-2129
0.001
1
PAX8-AS1
hsa-miR-708-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8408-8429
0.011
7
7mer
375-394
0.005
1
6mer
582-606
0.004
2
7mer
1673-1689
0.002
1
6mer
9763-9785
0.002
0
6mer
1569-1593
0.002
1
6mer
2247-2274
0.002
1
6mer
6657-6678
0.002
2
7mer
5919-5931
0.001
0
6mer
7847-7871
0.001
1
6mer
5454-5470
0.001
Not Conserved
6mer
4599-4610
0.001
1
6mer
9779-9800
0.001
1
LINC00649
hsa-miR-708-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-447
0.013
0
7mer
866-883
0.009
2
6mer
6576-6596
0.002
1
6mer
6144-6167
0.002
0
6mer
5803-5824
0.002
1
6mer
1006-1024
0.001
0
6mer
2622-2641
0.001
1
6mer
4982-5003
0.001
2
6mer
6678-6691
0.001
0
6mer
7908-7922
0.001
1
6mer
6208-6226
0.001
1
RP11-856M7.6
hsa-miR-708-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584734
Biotype: lincRNA
Gene id: ENSG00000266604
Gene Name: RP11-856M7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
828-852
0.034
0
LINC01287
hsa-miR-708-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-857
0.019
0
6mer
1592-1616
0.012
0
6mer
2259-2283
0.003
Not Conserved
XLOC_013010
hsa-miR-708-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1664-1686
0.019
0
6mer
1068-1088
0.012
0
6mer
1289-1314
0.003
Not Conserved
CACNA1C-AS1
hsa-miR-708-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544517
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-518
0.010
9
7mer
100-120
0.008
0
7mer
74-99
0.005
1
6mer
50-71
0.004
2
7mer
702-721
0.004
1
6mer
148-171
0.003
1
XLOC_013728
hsa-miR-708-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028653
Biotype: transcript isomorph
Gene id: XLOC_013728
Gene Name: XLOC_013728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-100
0.034
2
AC003958.2
hsa-miR-708-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000432258
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-332
0.011
7
6mer
93-103
0.005
3
6mer
326-336
0.004
5
7mer
2872-2888
0.004
5
6mer
3030-3051
0.003
6
7mer
2056-2072
0.003
6
7mer
1474-1494
0.003
1
6mer
2926-2949
0.001
1
6mer
2108-2133
0.001
1
LINC01422
hsa-miR-708-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434868
Biotype: lincRNA
Gene id: ENSG00000223704
Gene Name: LINC01422
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6022-6032
0.034
1
RP11-150O12.3
hsa-miR-708-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519691
Biotype: lincRNA
Gene id: ENSG00000254290
Gene Name: RP11-150O12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-669
0.029
0
6mer
1958-1984
0.003
3
6mer
995-1018
0.002
0
XLOC_003198
hsa-miR-708-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006571
Biotype: transcript isomorph
Gene id: XLOC_003198
Gene Name: XLOC_003198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-79
0.034
1
RP5-1160K1.8
hsa-miR-708-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526411
Biotype: antisense
Gene id: ENSG00000254942
Gene Name: RP5-1160K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-34
0.027
4
8mer
325-351
0.007
3
XLOC_000917
hsa-miR-708-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-180
0.034
4
AC016907.3
hsa-miR-708-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455424
Biotype: antisense
Gene id: ENSG00000233862
Gene Name: AC016907.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1138
0.028
2
6mer
2039-2054
0.002
1
7mer
1999-2021
0.001
2
6mer
1901-1924
0.001
0
6mer
2032-2054
0.001
Not Conserved
WWC2-AS1
hsa-miR-708-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511846
Biotype: antisense
Gene id: ENSG00000251128
Gene Name: WWC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-307
0.025
3
7mer
247-265
0.008
1
LOXL1-AS1
hsa-miR-708-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564194
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
521-541
0.011
1
7mer
2270-2288
0.007
2
6mer
1524-1547
0.004
1
6mer
684-707
0.004
1
7mer
2111-2126
0.003
1
6mer
967-987
0.003
1
6mer
881-885
0.002
Not Conserved
XLOC_006150
hsa-miR-708-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014163
Biotype: transcript isomorph
Gene id: XLOC_006150
Gene Name: XLOC_006150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-303
0.034
0
AP002954.3
hsa-miR-708-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530198
Biotype: antisense
Gene id: ENSG00000255176
Gene Name: AP002954.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-552
0.023
1
6mer
352-361
0.004
1
6mer
352-365
0.004
2
6mer
643-663
0.003
1
AC104777.2
hsa-miR-708-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441356
Biotype: lincRNA
Gene id: ENSG00000236049
Gene Name: AC104777.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-161
0.014
1
6mer
2357-2372
0.007
4
6mer
2230-2253
0.005
6
6mer
613-627
0.004
1
6mer
949-974
0.002
1
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