LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-597D13.9
hsa-miR-708-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508752
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1780-1804
0.020
0
6mer
2574-2600
0.008
2
6mer
203-229
0.004
1
6mer
2063-2086
0.003
1
SBF2-AS1
hsa-miR-708-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498905
Biotype: antisense
Gene id: ENSG00000246273
Gene Name: SBF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1982-2000
0.033
3
6mer
420-441
0.003
1
GS1-124K5.4
hsa-miR-708-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445681
Biotype: lincRNA
Gene id: ENSG00000237310
Gene Name: GS1-124K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-249
0.035
1
RP11-259K5.1
hsa-miR-708-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000603982
Biotype: lincRNA
Gene id: ENSG00000271653
Gene Name: RP11-259K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1163-1190
0.033
0
6mer
496-521
0.002
1
SEC24B-AS1
hsa-miR-708-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499713
Biotype: antisense
Gene id: ENSG00000247950
Gene Name: SEC24B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1179-1192
0.035
5
XLOC_004950
hsa-miR-708-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010434
Biotype: transcript isomorph
Gene id: XLOC_004950
Gene Name: XLOC_004950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-137
0.030
1
6mer
19-36
0.005
0
RP11-203B9.4
hsa-miR-708-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586234
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-556
0.020
0
7mer
658-680
0.010
Not Conserved
6mer
35-51
0.005
2
RP11-53M11.3
hsa-miR-708-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518787
Biotype: lincRNA
Gene id: ENSG00000254142
Gene Name: RP11-53M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-166
0.031
1
6mer
503-518
0.004
1
XIST
hsa-miR-708-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1607-1634
0.007
4
7mer
7946-7965
0.005
4
6mer
6679-6704
0.004
3
6mer
7085-7108
0.002
1
6mer
1250-1267
0.002
1
6mer
9763-9780
0.002
0
6mer
10319-10336
0.002
1
6mer
15409-15424
0.002
1
6mer
14436-14462
0.002
1
6mer
10600-10617
0.002
1
6mer
13885-13905
0.001
2
6mer
16203-16218
0.001
0
6mer
1587-1609
0.001
2
6mer
7029-7055
0.001
1
6mer
7853-7871
0.001
1
LINC01287
hsa-miR-708-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454441
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
624-649
0.027
1
7mer
948-969
0.008
0
LINC00606
hsa-miR-708-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412578
Biotype: lincRNA
Gene id: ENSG00000226567
Gene Name: LINC00606
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-339
0.033
1
6mer
1498-1515
0.002
2
MIR4435-1HG
hsa-miR-708-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609902
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-281
0.028
1
6mer
504-517
0.007
2
RP11-297L17.4
hsa-miR-708-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565229
Biotype: lincRNA
Gene id: ENSG00000261261
Gene Name: RP11-297L17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-317
0.035
1
RP11-35O15.2
hsa-miR-708-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618697
Biotype: sense_intronic
Gene id: ENSG00000278022
Gene Name: RP11-35O15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-82
0.028
1
7mer
132-158
0.007
0
RP4-798P15.3
hsa-miR-708-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466953
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2359-2385
0.023
6
6mer
109-131
0.008
6
6mer
3136-3152
0.003
9
6mer
1908-1921
0.001
2
BARX1-AS1
hsa-miR-708-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453045
Biotype: lincRNA
Gene id: ENSG00000235601
Gene Name: BARX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1117-1136
0.025
0
6mer
50-75
0.004
1
6mer
877-904
0.003
1
6mer
306-324
0.003
1
RNF157-AS1
hsa-miR-708-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590137
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1526-1540
0.012
2
8mer
209-228
0.008
1
9mer
1132-1153
0.004
1
6mer
1316-1339
0.003
3
6mer
1539-1564
0.002
0
6mer
1118-1143
0.002
2
6mer
1361-1386
0.002
Not Conserved
6mer
519-537
0.001
1
RP13-631K18.2
hsa-miR-708-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531559
Biotype: lincRNA
Gene id: ENSG00000254486
Gene Name: RP13-631K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2651-2674
0.028
1
7mer
1586-1598
0.004
0
6mer
2242-2266
0.003
1
XLOC_009941
hsa-miR-708-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020639
Biotype: transcript isomorph
Gene id: XLOC_009941
Gene Name: XLOC_009941
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-351
0.035
1
ADIPOQ-AS1
hsa-miR-708-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422718
Biotype: antisense
Gene id: ENSG00000226482
Gene Name: ADIPOQ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
748-770
0.010
2
8mer
2755-2767
0.008
2
6mer
1592-1609
0.004
9
6mer
398-421
0.003
0
6mer
939-956
0.003
2
6mer
379-404
0.003
1
6mer
696-720
0.002
2
6mer
1387-1411
0.001
1
6mer
1943-1969
0.001
1
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