LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP4-798P15.3
hsa-miR-708-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2356-2382
0.020
6
6mer
109-131
0.008
6
6mer
5495-5513
0.005
6
6mer
3133-3149
0.003
9
6mer
1905-1918
0.001
2
LL22NC03-22D1.1
hsa-miR-708-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16237-16253
0.009
1
6mer
168-181
0.006
1
6mer
16773-16797
0.002
1
6mer
14289-14302
0.002
0
7mer
25623-25636
0.002
1
6mer
18019-18039
0.002
Not Conserved
6mer
1527-1550
0.002
0
6mer
7151-7167
0.002
2
6mer
10425-10437
0.001
0
6mer
11428-11454
0.001
0
6mer
17643-17667
0.001
1
6mer
15272-15296
0.001
2
6mer
23064-23081
0.001
0
6mer
1324-1342
0.001
0
6mer
10527-10544
0.001
0
6mer
23105-23127
0.001
1
LINC00260
hsa-miR-708-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046213.1
Biotype: sense
Gene id: NR_046213.1 (gene)
Gene Name: LINC00260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-36
0.017
5
8mer
586-604
0.015
1
6mer
12-29
0.004
1
XLOC_003861
hsa-miR-708-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-146
0.031
1
6mer
926-948
0.005
Not Conserved
RP3-513G18.2
hsa-miR-708-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508619
Biotype: lincRNA
Gene id: ENSG00000250632
Gene Name: RP3-513G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-147
0.031
1
6mer
927-949
0.005
Not Conserved
RP11-620J15.4
hsa-miR-708-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619560
Biotype: antisense
Gene id: ENSG00000273805
Gene Name: RP11-620J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-354
0.036
1
XLOC_003061
hsa-miR-708-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-680
0.013
2
9mer
1879-1895
0.006
0
8mer
2077-2089
0.005
1
6mer
7020-7034
0.003
1
7mer
2208-2233
0.002
Not Conserved
6mer
5471-5484
0.002
2
6mer
1069-1094
0.002
1
6mer
4075-4087
0.002
0
6mer
2619-2643
0.001
2
RP11-451B8.1
hsa-miR-708-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462792
Biotype: lincRNA
Gene id: ENSG00000239572
Gene Name: RP11-451B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-283
0.022
1
7mer
485-501
0.012
1
6mer
407-433
0.002
0
INTS6-AS1
hsa-miR-708-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608520
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-354
0.036
1
RP11-362F19.1
hsa-miR-708-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506645
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-195
0.036
3
RP11-1217F2.15
hsa-miR-708-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415836
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-30
0.020
0
7mer
62-80
0.010
0
6mer
376-391
0.006
0
XLOC_013601
hsa-miR-708-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10335-10354
0.008
1
8mer
9497-9518
0.006
1
6mer
10277-10299
0.004
1
8mer
909-932
0.004
0
6mer
378-403
0.003
0
6mer
4992-5012
0.002
1
7mer
1977-2000
0.002
1
6mer
1769-1788
0.002
1
6mer
4669-4695
0.002
1
6mer
9347-9366
0.001
1
6mer
7639-7643
0.001
Not Conserved
6mer
2735-2762
0.001
0
6mer
1992-2018
0.001
1
6mer
8480-8498
0.001
0
RP11-91K9.1
hsa-miR-708-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2917-2944
0.034
1
6mer
1809-1825
0.002
0
RP11-597D13.9
hsa-miR-708-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503611
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2317-2342
0.028
0
6mer
666-676
0.004
4
6mer
2090-2110
0.003
1
RP11-430C7.5
hsa-miR-708-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444037
Biotype: lincRNA
Gene id: ENSG00000240219
Gene Name: RP11-430C7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
738-758
0.017
0
7mer
1853-1868
0.008
3
6mer
1566-1582
0.004
1
7mer
1331-1345
0.003
1
6mer
1162-1182
0.002
3
7mer
1347-1368
0.002
0
RP1-178F15.4
hsa-miR-708-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469931
Biotype: antisense
Gene id: ENSG00000272030
Gene Name: RP1-178F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.025
4
6mer
753-762
0.005
7
7mer
797-806
0.003
0
7mer
634-657
0.002
0
PROX1-AS1
hsa-miR-708-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598091
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-135
0.026
7
7mer
169-191
0.010
3
AC090044.2
hsa-miR-708-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423193
Biotype: lincRNA
Gene id: ENSG00000224239
Gene Name: AC090044.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
428-451
0.028
1
6mer
162-188
0.008
0
SBF2-AS1
hsa-miR-708-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_036485.1
Biotype: antisense
Gene id: NR_036485.1 (gene)
Gene Name: SBF2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1981-1999
0.033
3
6mer
419-440
0.003
1
RP11-232C2.3
hsa-miR-708-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-297
0.036
7
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