LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP4-798P15.3
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000354921
Biotype: processed_transcript
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2359-2385
0.025
6
6mer
112-134
0.008
6
6mer
3136-3152
0.003
9
6mer
1908-1921
0.001
2
XLOC_009650
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021051
Biotype: transcript isomorph
Gene id: XLOC_009650
Gene Name: XLOC_009650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-188
0.024
1
6mer
75-99
0.013
1
RP5-1033H22.2
hsa-miR-708-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431770
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-146
0.019
7
7mer
110-133
0.013
10
6mer
170-188
0.005
7
LINC00570
hsa-miR-708-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417473
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1170-1193
0.021
1
7mer
348-364
0.017
1
LINC00652
hsa-miR-708-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454749
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
442-464
0.037
3
AC093642.4
hsa-miR-708-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
354-369
0.013
1
7mer
90-116
0.012
0
7mer
40-63
0.012
0
MALAT1
hsa-miR-708-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508832
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-623
0.037
8
RP11-69I8.2
hsa-miR-708-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-313
0.026
0
7mer
1793-1799
0.011
0
AC073325.1
hsa-miR-708-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443714
Biotype: lincRNA
Gene id: ENSG00000225537
Gene Name: AC073325.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.031
1
7mer
455-471
0.007
0
RP3-326I13.1
hsa-miR-708-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440955
Biotype: lincRNA
Gene id: ENSG00000224294
Gene Name: RP3-326I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-216
0.034
1
6mer
1715-1738
0.003
2
INTS6-AS1
hsa-miR-708-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610018
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-354
0.037
1
RP11-794P6.1
hsa-miR-708-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528614
Biotype: sense_intronic
Gene id: ENSG00000255428
Gene Name: RP11-794P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2371
0.036
5
6mer
1308-1321
0.001
2
XLOC_009564
hsa-miR-708-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019770
Biotype: transcript isomorph
Gene id: XLOC_009564
Gene Name: XLOC_009564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-26
0.037
9
RP11-461A8.5
hsa-miR-708-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000622137
Biotype: antisense
Gene id: ENSG00000276754
Gene Name: RP11-461A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
357-372
0.025
0
6mer
52-63
0.007
1
6mer
280-307
0.004
1
RP11-627G23.1
hsa-miR-708-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4241-4259
0.026
0
8mer
2745-2759
0.005
0
7mer
1091-1116
0.003
1
7mer
3455-3477
0.002
1
6mer
1140-1166
0.001
Not Conserved
6mer
2865-2882
0.000
Not Conserved
RP11-161H23.9
hsa-miR-708-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553259
Biotype: antisense
Gene id: ENSG00000258334
Gene Name: RP11-161H23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2852-2871
0.008
9
7mer
3464-3486
0.006
6
7mer
3413-3430
0.004
5
7mer
1601-1620
0.004
11
7mer
1733-1751
0.003
8
7mer
996-1013
0.003
2
6mer
3356-3379
0.002
9
6mer
883-900
0.002
5
6mer
833-853
0.002
4
7mer
1592-1609
0.001
5
6mer
898-912
0.001
0
6mer
1700-1724
0.000
8
CTA-929C8.9
hsa-miR-708-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4739-4766
0.005
2
7mer
21550-21572
0.005
1
7mer
14986-14998
0.004
0
7mer
310-330
0.004
1
6mer
9623-9642
0.003
1
7mer
17941-17958
0.002
0
6mer
6254-6278
0.002
1
6mer
10188-10211
0.002
1
6mer
15471-15492
0.002
1
6mer
7914-7933
0.001
0
6mer
21152-21170
0.001
0
6mer
13137-13149
0.001
Not Conserved
6mer
2907-2928
0.001
1
6mer
21244-21259
0.001
1
6mer
5466-5492
0.001
1
6mer
20436-20451
0.001
Not Conserved
CTA-268H5.14
hsa-miR-708-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609206
Biotype: lincRNA
Gene id: ENSG00000273287
Gene Name: CTA-268H5.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-39
0.034
Not Conserved
6mer
563-582
0.003
1
RP11-166O4.6
hsa-miR-708-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609770
Biotype: lincRNA
Gene id: ENSG00000273448
Gene Name: RP11-166O4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1053-1074
0.033
2
6mer
585-596
0.004
1
LINC00320
hsa-miR-708-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435279
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1692-1718
0.034
1
6mer
519-543
0.003
2
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