LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-18J9.3
hsa-miR-708-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547033
Biotype: lincRNA
Gene id: ENSG00000258178
Gene Name: RP11-18J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-97
0.034
1
6mer
927-952
0.004
1
RP11-13N13.6
hsa-miR-708-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578583
Biotype: antisense
Gene id: ENSG00000265656
Gene Name: RP11-13N13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-438
0.038
2
XLOC_011696
hsa-miR-708-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
79-99
0.023
0
6mer
727-749
0.015
0
PRNCR1
hsa-miR-708-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12315-12337
0.011
2
7mer
462-477
0.007
0
7mer
1795-1817
0.003
1
6mer
11602-11612
0.002
1
6mer
11081-11104
0.002
0
6mer
3825-3852
0.002
1
6mer
6447-6469
0.002
1
6mer
11442-11460
0.002
1
6mer
6825-6845
0.001
1
6mer
6640-6663
0.001
0
6mer
4000-4016
0.001
1
6mer
6946-6972
0.001
1
6mer
5446-5472
0.001
0
6mer
1907-1928
0.001
0
XLOC_009195
hsa-miR-708-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019371
Biotype: transcript isomorph
Gene id: XLOC_009195
Gene Name: XLOC_009195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-227
0.038
1
CTC-215O4.4
hsa-miR-708-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587831
Biotype: antisense
Gene id: ENSG00000266936
Gene Name: CTC-215O4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-72
0.029
0
6mer
65-82
0.009
3
LINC01000
hsa-miR-708-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4030-4052
0.004
0
6mer
434-457
0.004
0
7mer
630-648
0.003
1
8mer
2021-2037
0.003
Not Conserved
8mer
1774-1788
0.003
Not Conserved
8mer+wobble
6427-6452
0.002
0
7mer
1545-1570
0.002
Not Conserved
7mer
725-743
0.002
0
7mer
883-904
0.002
0
7mer
1193-1211
0.002
0
7mer
7093-7110
0.002
0
7mer
2772-2791
0.001
0
7mer
3393-3419
0.001
0
7mer
2380-2394
0.001
Not Conserved
7mer
6208-6230
0.001
0
6mer
8591-8611
0.001
Not Conserved
6mer
7679-7689
0.001
0
6mer
6651-6671
0.001
0
7mer
3504-3518
0.001
0
7mer
1802-1820
0.001
0
6mer
6692-6712
0.000
1
6mer
6777-6800
0.000
1
6mer
2430-2446
0.000
Not Conserved
SMAD5-AS1
hsa-miR-708-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026763.1
Biotype: antisense
Gene id: NR_026763.1 (gene)
Gene Name: SMAD5-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1477-1494
0.038
1
RP11-597D13.9
hsa-miR-708-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505532
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1283-1307
0.020
0
6mer
2077-2103
0.008
2
6mer
45-55
0.007
4
6mer
1566-1589
0.003
1
CTB-39G8.3
hsa-miR-708-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592389
Biotype: antisense
Gene id: ENSG00000267344
Gene Name: CTB-39G8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-307
0.033
0
6mer
223-245
0.005
1
SMAD5-AS1
hsa-miR-708-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000297163
Biotype: antisense
Gene id: ENSG00000164621
Gene Name: SMAD5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1483-1500
0.038
1
LINC00570
hsa-miR-708-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453100
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-252
0.038
1
LINC01001
hsa-miR-708-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-347
0.008
Not Conserved
7mer
577-599
0.003
0
7mer
4193-4211
0.003
0
8mer
2789-2805
0.003
Not Conserved
8mer
3038-3054
0.002
Not Conserved
6mer
4384-4407
0.002
Not Conserved
7mer
4098-4116
0.002
Not Conserved
7mer
966-992
0.002
Not Conserved
7mer
3937-3958
0.002
Not Conserved
7mer
300-317
0.002
Not Conserved
7mer
3256-3281
0.002
Not Conserved
7mer
3615-3629
0.001
Not Conserved
7mer
867-881
0.001
Not Conserved
7mer
2432-2446
0.001
Not Conserved
6mer
814-830
0.001
Not Conserved
7mer
2035-2054
0.001
Not Conserved
7mer
3006-3024
0.001
0
6mer
1952-1971
0.000
Not Conserved
6mer
2380-2396
0.000
Not Conserved
DGCR10
hsa-miR-708-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609839
Biotype: sense_intronic
Gene id: ENSG00000273164
Gene Name: DGCR10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-58
0.024
0
7mer
277-299
0.014
1
FAM201A
hsa-miR-708-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027294.1
Biotype: lincRNA
Gene id: NR_027294.1 (gene)
Gene Name: FAM201A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-833
0.019
1
6mer
801-816
0.006
1
6mer
30-49
0.005
0
7mer
392-409
0.004
0
6mer
653-669
0.003
0
RP11-486O13.4
hsa-miR-708-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556646
Biotype: lincRNA
Gene id: ENSG00000257759
Gene Name: RP11-486O13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-386
0.038
1
XLOC_008527
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018249
Biotype: transcript isomorph
Gene id: XLOC_008527
Gene Name: XLOC_008527
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-712
0.014
0
7mer
578-605
0.011
2
6mer
595-618
0.009
4
6mer
663-683
0.004
1
LINC00570
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432665
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-223
0.038
1
RP11-326K13.4
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580420
Biotype: antisense
Gene id: ENSG00000263823
Gene Name: RP11-326K13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-164
0.021
10
8mer
1471-1492
0.017
0
AC100848.1
hsa-miR-708-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000452004
Biotype: lincRNA
Gene id: ENSG00000236392
Gene Name: AC100848.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-56
0.038
3
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