LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
LINC01330
hsa-miR-708-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-133
0.032
3
7mer
1519-1535
0.008
0
RP1-225E12.3
hsa-miR-708-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000612486
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
883-906
0.040
6
RP11-115D19.1
hsa-miR-708-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000612706
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2193-2210
0.029
0
7mer
1158-1175
0.005
1
7mer
1449-1464
0.005
0
CTD-3018O17.3
hsa-miR-708-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594119
Biotype: retained_intron
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2579-2596
0.014
1
7mer
2175-2201
0.007
1
6mer
2303-2323
0.005
1
6mer
2373-2398
0.004
0
6mer
79-102
0.004
0
6mer
75-102
0.003
0
6mer
1789-1816
0.003
1
PAX8-AS1
hsa-miR-708-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609210
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
819-840
0.032
7
6mer
226-250
0.006
2
6mer
478-494
0.002
Not Conserved
XLOC_011061
hsa-miR-708-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022777
Biotype: transcript isomorph
Gene id: XLOC_011061
Gene Name: XLOC_011061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-253
0.040
1
GS1-124K5.4
hsa-miR-708-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452565
Biotype: lincRNA
Gene id: ENSG00000237310
Gene Name: GS1-124K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-169
0.039
1
XLOC_009474
hsa-miR-708-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7260-7273
0.021
0
9mer
5915-5931
0.010
6
7mer
1682-1700
0.004
4
7mer
1634-1652
0.002
4
6mer
2685-2708
0.002
2
6mer
1544-1555
0.001
0
6mer
1594-1611
0.001
1
RP1-309I22.2
hsa-miR-708-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
307-330
0.003
2
6mer
398-411
0.003
1
7mer
28605-28630
0.003
1
6mer
125-149
0.003
2
6mer
11034-11057
0.003
3
7mer
27576-27594
0.002
0
6mer
6900-6913
0.002
1
6mer
11341-11363
0.002
3
6mer
1229-1245
0.002
Not Conserved
6mer
17012-17023
0.002
1
6mer
23905-23920
0.002
5
6mer
12098-12114
0.001
2
6mer
26648-26659
0.001
1
6mer
25537-25557
0.001
2
6mer
21261-21288
0.001
1
6mer
12709-12733
0.001
0
6mer
3586-3613
0.001
1
7mer
12120-12139
0.001
1
6mer
13616-13641
0.001
1
6mer
25360-25383
0.001
Not Conserved
6mer
3911-3925
0.001
0
6mer
6680-6696
0.001
1
6mer
1324-1349
0.001
1
XLOC_006942
hsa-miR-708-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014875
Biotype: transcript isomorph
Gene id: XLOC_006942
Gene Name: XLOC_006942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1488-1500
0.020
1
8mer
1275-1295
0.009
0
6mer
291-310
0.005
2
6mer
600-626
0.004
2
6mer
1137-1161
0.002
0
AC009506.1
hsa-miR-708-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418474
Biotype: antisense
Gene id: ENSG00000224152
Gene Name: AC009506.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1077-1088
0.024
6
6mer
98-123
0.007
4
6mer
735-747
0.005
7
6mer
812-836
0.003
2
SNCA-AS1
hsa-miR-708-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501215
Biotype: antisense
Gene id: ENSG00000247775
Gene Name: SNCA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-362
0.030
6
6mer
2256-2269
0.004
0
6mer
836-858
0.003
2
6mer
1619-1630
0.002
1
AC100848.1
hsa-miR-708-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000417298
Biotype: lincRNA
Gene id: ENSG00000236392
Gene Name: AC100848.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-209
0.039
3
RP4-755D9.1
hsa-miR-708-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000553843
Biotype: antisense
Gene id: ENSG00000258545
Gene Name: RP4-755D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1192-1218
0.024
1
7mer
494-504
0.006
1
6mer
1398-1420
0.004
1
6mer
1779-1804
0.004
0
LOC100133331
hsa-miR-708-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-347
0.008
Not Conserved
7mer
3852-3870
0.004
0
8mer
2448-2464
0.003
Not Conserved
7mer
3596-3617
0.003
Not Conserved
6mer
4043-4066
0.002
Not Conserved
8mer
2697-2713
0.002
Not Conserved
7mer
577-599
0.002
Not Conserved
7mer
3757-3775
0.002
Not Conserved
7mer
966-992
0.002
Not Conserved
7mer
2915-2940
0.002
Not Conserved
7mer
300-317
0.002
Not Conserved
7mer
3274-3288
0.001
Not Conserved
7mer
867-881
0.001
Not Conserved
7mer
2091-2105
0.001
Not Conserved
7mer
2665-2683
0.001
0
6mer
814-830
0.001
Not Conserved
7mer
1694-1713
0.001
Not Conserved
6mer
1611-1630
0.000
Not Conserved
6mer
2039-2055
0.000
Not Conserved
XLOC_006133
hsa-miR-708-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013490
Biotype: transcript isomorph
Gene id: XLOC_006133
Gene Name: XLOC_006133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-66
0.039
1
SPATA41
hsa-miR-708-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558307
Biotype: lincRNA
Gene id: ENSG00000189419
Gene Name: SPATA41
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1043-1062
0.032
1
6mer
1192-1210
0.004
0
6mer
1002-1028
0.002
0
CTD-3193K9.11
hsa-miR-708-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613683
Biotype: lincRNA
Gene id: ENSG00000273650
Gene Name: CTD-3193K9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.020
2
6mer
344-348
0.014
5
6mer
277-288
0.005
2
EMX2OS
hsa-miR-708-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5971-5992
0.009
2
7mer
6661-6683
0.008
2
6mer
7035-7058
0.005
5
6mer
356-368
0.005
0
7mer
5088-5109
0.004
4
6mer
6628-6646
0.003
1
6mer
7066-7082
0.003
2
6mer
4831-4850
0.001
1
6mer
1044-1067
0.001
Not Conserved
XLOC_002674
hsa-miR-708-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006033
Biotype: transcript isomorph
Gene id: XLOC_002674
Gene Name: XLOC_002674
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-47
0.038
1
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