LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP5-1025A1.3
hsa-miR-657
0.866
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613001
Biotype: lincRNA
Gene id: ENSG00000275358
Gene Name: RP5-1025A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-38
0.029
1
6mer
125-133
0.006
1
6mer
168-188
0.006
1
AC011891.5
hsa-miR-657
0.865
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437088
Biotype: lincRNA
Gene id: ENSG00000229233
Gene Name: AC011891.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-320
0.041
3
RP11-429E11.3
hsa-miR-657
0.864
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000317652
Biotype: antisense
Gene id: ENSG00000179253
Gene Name: RP11-429E11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-193
0.038
1
7mer
950-966
0.003
1
XLOC_000313
hsa-miR-657
0.864
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002104
Biotype: transcript isomorph
Gene id: XLOC_000313
Gene Name: XLOC_000313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-161
0.033
5
6mer
219-234
0.008
6
XLOC_006140
hsa-miR-657
0.864
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013019
Biotype: transcript isomorph
Gene id: XLOC_006140
Gene Name: XLOC_006140
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-675
0.041
0
RP11-157B13.7
hsa-miR-657
0.863
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599810
Biotype: lincRNA
Gene id: ENSG00000267872
Gene Name: RP11-157B13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
244-259
0.015
0
6mer
325-350
0.012
0
6mer
314-329
0.010
0
6mer
1540-1562
0.003
Not Conserved
RP11-290F5.1
hsa-miR-657
0.862
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610683
Biotype: lincRNA
Gene id: ENSG00000249096
Gene Name: RP11-290F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-640
0.027
2
7mer
455-469
0.009
1
7mer
285-308
0.005
0
LOC100506124
hsa-miR-657
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_045375.1
Biotype: sense
Gene id: NR_045375.1 (gene)
Gene Name: LOC100506124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1265-1279
0.037
2
7mer
463-490
0.004
1
CTC-425O23.2
hsa-miR-657
0.862
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000378432
Biotype: sense_intronic
Gene id: ENSG00000205041
Gene Name: CTC-425O23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-142
0.010
1
6mer
207-233
0.009
4
6mer
105-125
0.006
5
6mer
699-721
0.003
3
6mer
1347-1367
0.003
2
6mer
798-822
0.003
4
6mer
656-678
0.002
1
6mer
924-949
0.002
1
6mer
919-938
0.001
0
6mer
894-918
0.001
1
HNRNPUL2-BSCL2
hsa-miR-657
0.861
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-231
0.016
7
6mer
118-145
0.007
8
6mer
837-843
0.004
7
6mer
624-646
0.004
1
7mer
1277-1290
0.004
3
8mer
149-176
0.004
0
6mer
602-628
0.003
5
RP11-483F11.7
hsa-miR-657
0.861
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452391
Biotype: antisense
Gene id: ENSG00000229278
Gene Name: RP11-483F11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-203
0.040
1
RP11-1008C21.2
hsa-miR-657
0.860
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560198
Biotype: lincRNA
Gene id: ENSG00000236914
Gene Name: RP11-1008C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-323
0.018
3
6mer
516-540
0.010
8
6mer
64-89
0.005
1
6mer
320-346
0.005
1
6mer
865-887
0.003
1
RBFADN
hsa-miR-657
0.859
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568911
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-37
0.015
0
7mer
4442-4463
0.005
1
6mer
563-589
0.003
0
7mer
701-724
0.003
0
6mer
3893-3919
0.002
1
6mer
1404-1427
0.002
0
7mer
2436-2457
0.002
0
6mer
2299-2325
0.002
1
6mer
1888-1910
0.002
1
6mer
3259-3283
0.002
1
6mer
4491-4513
0.001
0
RP11-94C24.13
hsa-miR-657
0.859
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620769
Biotype: lincRNA
Gene id: ENSG00000275897
Gene Name: RP11-94C24.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
222-244
0.004
2
6mer
2189-2215
0.003
1
6mer
251-272
0.003
1
6mer
1129-1153
0.002
1
6mer
1482-1508
0.002
0
6mer
275-296
0.002
0
6mer
515-536
0.002
1
6mer
347-368
0.002
0
6mer
222-248
0.002
Not Conserved
6mer
419-440
0.002
0
6mer
467-488
0.002
0
6mer
443-464
0.002
0
6mer
568-584
0.002
1
6mer
299-320
0.002
Not Conserved
6mer
323-344
0.002
Not Conserved
6mer
544-560
0.002
1
6mer
491-512
0.002
0
6mer
371-392
0.002
Not Conserved
6mer
395-416
0.002
Not Conserved
bP-2189O9.3
hsa-miR-657
0.858
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
522-540
0.028
0
6mer
301-325
0.012
0
PP14571
hsa-miR-657
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000538012
Biotype: retained_intron
Gene id: ENSG00000218416
Gene Name: PP14571
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-218
0.012
1
7mer
1614-1619
0.007
1
6mer
67-94
0.006
1
6mer
1542-1564
0.005
0
6mer
1560-1581
0.004
1
6mer
893-917
0.003
1
6mer
1104-1122
0.002
1
RP11-728E14.3
hsa-miR-657
0.857
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
772-787
0.015
1
6mer
1223-1246
0.006
1
7mer
1548-1566
0.005
1
6mer
1366-1376
0.004
1
6mer
1458-1475
0.003
1
6mer
1768-1794
0.003
0
6mer
1667-1679
0.002
0
6mer
1948-1966
0.001
Not Conserved
6mer
1452-1475
0.001
0
LINC01515
hsa-miR-657
0.857
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433152
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1274-1281
0.020
0
7mer
1109-1130
0.016
Not Conserved
6mer
902-925
0.004
1
CTA-228A9.4
hsa-miR-657
0.855
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
190-216
0.004
1
6mer
12869-12892
0.003
7
7mer
8007-8033
0.003
1
7mer
2049-2060
0.003
1
6mer
13429-13443
0.002
4
6mer
5288-5313
0.002
2
6mer
12116-12120
0.002
0
7mer
8852-8875
0.001
0
8mer
4678-4702
0.001
1
6mer
16655-16678
0.001
0
7mer
16791-16810
0.001
0
6mer
4588-4609
0.001
1
6mer
14917-14940
0.001
1
7mer
18877-18898
0.001
0
6mer
18742-18764
0.001
1
6mer
9307-9333
0.001
0
6mer
13616-13641
0.001
0
6mer
16345-16352
0.001
1
6mer
16194-16217
0.001
1
6mer
14073-14093
0.001
0
6mer
3915-3934
0.001
1
6mer
7910-7930
0.001
1
6mer
6748-6771
0.001
1
6mer
8243-8270
0.001
0
6mer
2072-2097
0.001
1
6mer
4722-4743
0.000
0
6mer
16791-16814
0.000
0
8mer+wobble
4705-4725
0.000
1
XLOC_005501
hsa-miR-657
0.855
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1373-1396
0.040
1
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