LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
XLOC_006468
hsa-miR-657
0.884
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3238-3249
0.008
1
6mer
3102-3120
0.007
1
6mer
3178-3204
0.006
1
6mer
2610-2633
0.004
1
6mer
682-706
0.004
0
6mer
2728-2743
0.004
1
6mer
2803-2814
0.004
0
6mer
556-579
0.003
0
6mer
2427-2442
0.002
0
6mer
2310-2321
0.001
0
CTD-2555K7.2
hsa-miR-657
0.884
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554194
Biotype: retained_intron
Gene id: ENSG00000258458
Gene Name: CTD-2555K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-245
0.044
1
CTA-212A2.3
hsa-miR-657
0.883
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14123-14143
0.007
0
7mer
847-852
0.005
0
6mer
13920-13940
0.004
1
6mer
610-630
0.003
0
8mer
8874-8897
0.003
Not Conserved
6mer
470-493
0.002
0
6mer
8635-8658
0.002
1
6mer
13236-13261
0.002
0
6mer
12012-12038
0.002
0
6mer
5869-5895
0.002
1
7mer
4624-4635
0.002
1
6mer
11476-11499
0.002
1
6mer
9736-9759
0.001
0
6mer
12298-12312
0.001
0
6mer
4929-4955
0.001
1
6mer
3365-3387
0.001
Not Conserved
6mer
9032-9053
0.001
1
6mer
5181-5200
0.001
0
6mer
11615-11633
0.001
0
6mer
9774-9796
0.000
0
LINC01237
hsa-miR-657
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457686
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
530-555
0.026
1
6mer
551-559
0.018
1
XLOC_010133
hsa-miR-657
0.882
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
759-786
0.025
0
6mer
108-127
0.018
0
RP5-882C2.2
hsa-miR-657
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588279
Biotype: antisense
Gene id: ENSG00000260793
Gene Name: RP5-882C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-128
0.031
3
6mer
56-76
0.005
4
6mer
162-169
0.005
3
6mer
425-446
0.003
0
LOC285762
hsa-miR-657
0.880
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2997-3018
0.039
3
6mer
1071-1083
0.002
1
6mer
2767-2794
0.002
1
RP11-34P13.13
hsa-miR-657
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4600-4623
0.015
1
6mer
4735-4761
0.015
1
6mer
4000-4023
0.007
1
6mer
2366-2389
0.004
1
6mer
2502-2528
0.003
0
RP5-1180C10.2
hsa-miR-657
0.876
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037642.1
Biotype: sense
Gene id: NR_037642.1 (gene)
Gene Name: RP5-1180C10.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2169-2193
0.024
6
6mer
2495-2520
0.008
3
6mer
2405-2431
0.004
2
6mer
204-228
0.002
0
6mer
408-428
0.002
0
6mer
1477-1499
0.001
0
6mer
1461-1481
0.001
2
STT3A-AS1
hsa-miR-657
0.875
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530526
Biotype: antisense
Gene id: ENSG00000254671
Gene Name: STT3A-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-125
0.040
0
6mer
220-240
0.003
Not Conserved
XLOC_009945
hsa-miR-657
0.872
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020646
Biotype: transcript isomorph
Gene id: XLOC_009945
Gene Name: XLOC_009945
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-415
0.025
0
7mer
189-208
0.017
3
RP11-206L10.3
hsa-miR-657
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4735-4761
0.015
0
6mer
4600-4623
0.014
0
6mer
4000-4023
0.008
0
6mer
2363-2386
0.004
0
6mer
2499-2525
0.001
Not Conserved
RP11-67L2.2
hsa-miR-657
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4717-4743
0.028
1
7mer
1797-1824
0.007
2
6mer
873-896
0.002
1
6mer
1550-1570
0.002
1
6mer
3301-3318
0.002
3
6mer
4765-4792
0.001
0
XLOC_013601
hsa-miR-657
0.871
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9820-9847
0.004
1
7mer
9885-9902
0.003
0
7mer
9950-9961
0.003
1
6mer
9873-9889
0.003
0
6mer
10219-10239
0.003
0
6mer
4462-4481
0.003
6
7mer
3661-3675
0.003
1
6mer
9950-9966
0.003
2
6mer
9885-9907
0.002
1
6mer
1373-1396
0.002
1
6mer
4630-4656
0.002
4
6mer
4289-4305
0.002
1
6mer
1064-1087
0.002
1
6mer
1970-1992
0.001
1
6mer
3781-3803
0.001
1
6mer
2198-2224
0.001
2
6mer
8688-8712
0.001
1
6mer
9013-9026
0.001
1
7mer
4011-4034
0.001
0
6mer
3907-3933
0.001
1
6mer
4047-4074
0.001
1
XLOC_009222
hsa-miR-657
0.870
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6097-6123
0.018
0
8mer
2699-2724
0.011
0
6mer
2644-2667
0.007
0
6mer
4475-4498
0.006
0
XLOC_000022
hsa-miR-657
0.870
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4070-4097
0.009
2
9mer
1214-1236
0.008
1
6mer
4152-4168
0.007
1
6mer
151-176
0.003
0
6mer
366-382
0.003
0
7mer
868-890
0.003
0
6mer
4214-4240
0.002
0
6mer
2869-2893
0.002
1
6mer
1391-1413
0.002
1
7mer
2945-2969
0.001
0
6mer
2438-2455
0.001
1
LINC00470
hsa-miR-657
0.870
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580336
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-340
0.042
2
CTB-51A17.1
hsa-miR-657
0.870
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503244
Biotype: antisense
Gene id: ENSG00000251423
Gene Name: CTB-51A17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-508
0.035
2
6mer
81-90
0.007
3
RP11-1008C21.2
hsa-miR-657
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000434223
Biotype: lincRNA
Gene id: ENSG00000236914
Gene Name: RP11-1008C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-624
0.017
3
6mer
817-841
0.012
8
6mer
621-647
0.005
1
6mer
365-390
0.004
1
6mer
172-195
0.003
0
LOC100130899
hsa-miR-657
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_039988.1
Biotype: sense
Gene id: NR_039988.1 (gene)
Gene Name: LOC100130899
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4016-4036
0.026
0
6mer
3831-3858
0.004
1
6mer
984-1002
0.002
1
7mer
2271-2297
0.002
0
6mer
1623-1639
0.002
2
7mer
1780-1801
0.002
0
6mer
2906-2925
0.002
3
6mer
1842-1863
0.001
3
6mer
1908-1920
0.001
3
6mer
1889-1912
0.001
2
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